Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1513 ATGGAAGATGATCGTACTCCAAAACCAGTAGTTATCATCACAGGATGTTCCACCGGAGGGATAGGCCACGCGCTTGCGTGCGCGTTCGCGGAGAAGAAGTGCAGGGTGGTGGCGACGAGTAGGTCGCGGTCGAGCATGGCGGAGCTGGAACACGACCACAGATTTTTGTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGCGCAGAGTGGTTGACGCAGTTGTCGAAACGTACGGTCGCATCGACGTGCTCGTTAACAACGCAGGTATTCAGTGCGTGGGTCCACTTGCCGAGGTTCCTCTCTCATCCATCCAAAACACTTTCGACACCAATGTATTCGGTTCCTTGAGAATGGTTCAGGCGGTTGTTCCTCATATGGCAACTAGGAAAAAGGGGAAGATTGTGAATATTGGCAGTGTTGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTATACTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTCTGCCGGGAGCTATCAAATCAAATATTGGAGATTCTGCCATAGCCAGCTACAACCGCATGCCTGAATGGAAATTGTTCAAGCCTTTTGAAGCAGCAATCCGAGACAGAGCTTACTTTTCTCAGAAGTCGAAATCAACTCCCACAGATGAGTTTGCTAGAAACACTGTAGCTGCTATTCTTAAGGAGAAACCGCCGGCATGGTTTACCTATGGACATTACTCTACTGTCATGGCTATCATGTATCATTTACCAATCTCTGTTAGAGATTTTATCTTGAAGAAAGCAATGAAATGCTGA 840 0.4702 MEDDRTPKPVVIITGCSTGGIGHALACAFAEKKCRVVATSRSRSSMAELEHDHRFLLEELDVQSDESVRRVVDAVVETYGRIDVLVNNAGIQCVGPLAEVPLSSIQNTFDTNVFGSLRMVQAVVPHMATRKKGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRLELGHFGIDVVNVLPGAIKSNIGDSAIASYNRMPEWKLFKPFEAAIRDRAYFSQKSKSTPTDEFARNTVAAILKEKPPAWFTYGHYSTVMAIMYHLPISVRDFILKKAMKC* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1513 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 263 IPR036291 -
Vra2g1513 279 Pfam short chain dehydrogenase 10 193 IPR002347 -
Vra2g1513 279 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 8 277 - -
Vra2g1513 279 PANTHER BNAANNG04690D PROTEIN 8 277 - -
Vra2g1513 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Vra2g1513 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 IPR002347 -
Vra2g1513 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 IPR002347 -
Vra2g1513 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 140 168 IPR020904 GO:0016491
Vra2g1513 279 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 179 - -
Vra2g1513 279 PRINTS Glucose/ribitol dehydrogenase family signature 11 28 IPR002347 -
Vra2g1513 279 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Vra2g1513 279 PRINTS Glucose/ribitol dehydrogenase family signature 127 143 IPR002347 -
Vra2g1513 279 PRINTS Glucose/ribitol dehydrogenase family signature 153 172 IPR002347 -
Vra2g1513 279 PRINTS Glucose/ribitol dehydrogenase family signature 174 191 IPR002347 -
Vra2g1513 279 Coils Coil 46 66 - -
Vra2g1513 279 Gene3D - 9 269 - -
Vra2g1513 279 CDD 17beta-HSD-like_SDR_c 10 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1513 Vra-Chr2 23095818 23097730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1513 12 183 Lipid Metabolism Gene Families AT1G67730 31.551 1.05e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1513 - - gmx:100789660 513.457