Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1512 ATGTCGCCAAAGTATCAGACTCCGCCAAAATATCAGACTCTCGACAATCGTCCAATCAATCAGTGGAAGGTTACGGAACTGAGAGAGGAGCTGAGGAGGAGGAGGTTAAACACCAAAGGTCTGAAGGATGATTTGGTAAAACGGTTGGATGAATGTCTTCGTCTTGAAAGGGATGGTGAGCAGGATTCTGAGAAGGAGGAGGAGGCCAATGGTTTTGATGATGGTCATGTAGATGGAGAAAAGGATTCTGCGGCGGTTACTATGGATGCTGAAGTCGTTGACGCAACTGACAAGCAAAGTACCCAAACATTTGAGACTGCTGAAAAGGGGAAGAGTGATGTAGTTGAACCGATCGAAACAGAAAATGAAGAAAAGTTTCCGGGGGTTGTGGATGAAGACAGCAATAAGACTGGCAAGCAGGATGGTATTGCTGGCCAAGTTGACATTAATAATAGTGTGTCAACCATGGATGAAGAAGTTGAACACGAGGGCCTTCCCTCCGGTGTTGATTCTGGAAATGTGGTAGAGGAGGTGGCTAGTACTCATGCTTCGACTGCAGAGACCACAATTACAGTCACTGAAAGTTTAGTAACAGGAGTGGTAGTCAGTGGTGAGGATTCATATTGTGCAGAAAAGAACAATGAGTTTTCTGCAGCAAAGCTAGAGAATGAGGAGTCAAAGGCGCAGCTGGACGGTGAGGATACAAAGCCCCAACTGGATTCTGAGACAAAGCCCCTGCACGAGGATATTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTGAAATTAGAACAAGATATTATTAAGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATGCAATGGATGTTGGAGGGCGGCATGAGAAAAAGACATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGACTTGAATAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAATTTAGACAGAAGTTCTGGTGATGATTCCATGGAAGAAGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAGAAAGAAAGTGGAGAGTATTGAAGAGCCTATTGTGAAGGAGGAAAGTAGGACTATAGCTGTGGGAGATGGTGTATCTGGAGGAAAAAATGATACCCACCAAGATATTGACATTAGTCCCGTAGCCCCAACTGAGAAACGAAAATTCCATGAACAAACATCGGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGATCCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGAAGAGCCAATTGCTCTGAAACGCAACCTCTCTAGGTCTGATTCCTCTGCTACTGATGACACACCTAAAGAGCGCATTGTTCCACCATCACCAAGGTCCCCAACTAATTCCCTCAGGATTGATCGATTCCTCCGTCCATTTACTCTGAAAGCTGTGCAAGAACTTCTTGGTAAGACTGGGAATGTTAGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTTACTTACTCATCTGTTGAAGAAGCCACGGAGACACGGAATGCTGTGTATAATTTGCAATGGCCACCAAATGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGCTAGAACCTCCTGTACAGACTGCCCCCATCAGTACTGCTCCAGTAGTTCCGCCTGTGGTCCCCACATCACAGCCAGAGCCTTCCCCTCGGCTGCACAGGGAGCAGCATTCAGTTCCAACTATGCTCCCACCTCCACCACCATTGTCAAAAAACCCACCAGTAGCTAGAGATCGGCTTCCATCACCACCACCTCTTCCAGAGAAAGTTGACCCACCTATTGTCACTCTTGATGATCTCTTCCGCAAAACCAAAGCAACTCCTCGGATCTACTACTTGCCTTTGACCGATGAGCAAGTTGCTGCAAAACTTGCTGCACAGGGTAAGGATCCGAGGAGGTGGGCCAAGTAA 2163 0.4489 MSPKYQTPPKYQTLDNRPINQWKVTELREELRRRRLNTKGLKDDLVKRLDECLRLERDGEQDSEKEEEANGFDDGHVDGEKDSAAVTMDAEVVDATDKQSTQTFETAEKGKSDVVEPIETENEEKFPGVVDEDSNKTGKQDGIAGQVDINNSVSTMDEEVEHEGLPSGVDSGNVVEEVASTHASTAETTITVTESLVTGVVVSGEDSYCAEKNNEFSAAKLENEESKAQLDGEDTKPQLDSETKPLHEDIVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQDIIKPEMVEEPSSRNDVPVSYDESHAMDVGGRHEKKTSVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDELRKKVESIEEPIVKEESRTIAVGDGVSGGKNDTHQDIDISPVAPTEKRKFHEQTSVGNNEPAKRQRRWNTETVKGPDPQSTTPRPATTPREEPIALKRNLSRSDSSATDDTPKERIVPPSPRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEATETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPVQTAPISTAPVVPPVVPTSQPEPSPRLHREQHSVPTMLPPPPPLSKNPPVARDRLPSPPPLPEKVDPPIVTLDDLFRKTKATPRIYYLPLTDEQVAAKLAAQGKDPRRWAK* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1512 720 CDD RRM_ACINU 523 607 IPR034257 -
Vra2g1512 720 MobiDBLite consensus disorder prediction 55 80 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 109 138 - -
Vra2g1512 720 Pfam RNSP1-SAP18 binding (RSB) motif 673 711 IPR032552 -
Vra2g1512 720 MobiDBLite consensus disorder prediction 255 281 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 220 281 - -
Vra2g1512 720 ProSiteProfiles SAP motif profile. 19 53 IPR003034 -
Vra2g1512 720 MobiDBLite consensus disorder prediction 220 251 - -
Vra2g1512 720 Coils Coil 209 229 - -
Vra2g1512 720 Pfam SAP domain 19 50 IPR003034 -
Vra2g1512 720 MobiDBLite consensus disorder prediction 344 364 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 613 677 - -
Vra2g1512 720 SMART sap_9 19 53 IPR003034 -
Vra2g1512 720 MobiDBLite consensus disorder prediction 93 149 - -
Vra2g1512 720 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 10 714 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 644 675 - -
Vra2g1512 720 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 10 714 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 493 509 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 615 630 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 470 485 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 366 415 - -
Vra2g1512 720 SUPERFAMILY SAP domain 19 56 IPR036361 -
Vra2g1512 720 SUPERFAMILY RNA-binding domain, RBD 517 604 IPR035979 GO:0003676
Vra2g1512 720 MobiDBLite consensus disorder prediction 94 108 - -
Vra2g1512 720 MobiDBLite consensus disorder prediction 306 525 - -
Vra2g1512 720 Gene3D SAP domain 19 70 IPR036361 -
Vra2g1512 720 MobiDBLite consensus disorder prediction 329 343 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1512 K12875 - gmx:100786288 1125.15