Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1510 ATGTGCCAGATCTCGATCTCGATGCGGTGGAGGTTGCTGCTATTGTTGTTGTTGGAGCTAACGGCACGCGGAATGCCGCTTCCGATCACGTTTTCCGCGCGCCTCGTTCACCGCTTCGCTGACGAAATCAAACCGGTTCGAATTCCGACCGGCGACTGGCCAGACCGGAAGAGCTTGCGCTACTACCACATGCTTCTCGCCGACGACATTCTCAGACGCAAGATCAAACTCGGAGGCGCTCGCTACCAGCTTCTGTTTCCTACTCACGGTAGCAAAACATTGTCGCTCGGCAACGACTTCGGCTGGTTACATTACACGTGGATTGATGTAGGAACACCGAGTACTTCGTTTCTCGTGGCGTTGGACGCAGGCAGTGATCTTCTTTGGATTCCGTGTGACTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAATATAGTCCGTCTCGATCGTTATCCAGTAAGCATCTATCTTGCAGTAATCACTGGTGTGATAATGGTTCGAATTGTAAAAGTTCCCAGCAGCAGTGTCCGTACATGGTCAGTTACTTGTCAGATAATACATCGAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCTGGTAGCGGTTTATCAAACTCCTCTGTTCAGGCTCCAGTTGTTCTTGGATGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCCCCCGATGGTCTATTAGGTTTGGGACCTGGGGAGAGTTCTGTTCCAAGTTTTCTTGCCAACTCAGGATTAATCCACAATTCCTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAAGGACCAACCATCCAACAGTCTACCCCGTTCTTGCCTTTGGATGGATTATATTCAACGTACATTGTTGGAGTGGATTCATCATGTATTGGGAATACTTGTCTTAAAATGACAAGTTTTAAAGCACAGATTGATAGCGGAACGTCTTTTACATTTCTTCCTGGCCATGCTTATGGAGTAATAGCCGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGCTATGTATCCAGTTCAAAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCGTGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCGTTGGATTTTGTTTAGCCATCCAGCCAACAGAAGGGGATATGGGAACAATTGGACAGAACTTCATGACTGGATACCGTTTGGTATTTGATCGGGAAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATTTGAGTGTAGGTAAGAGGATGCCCCTTTCTCCAAATGAGACTTCACCAAACCCATTGCCTTCAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAATCTTCAGCAGCTTTATCTCGGATGAATTCATCGTTCCGGGTATATTGGCATTGCTATTTCTTTCTTCTATTTCAACTCGTGTCTGCCTCTTACTGA 1587 0.4587 MCQISISMRWRLLLLLLLELTARGMPLPITFSARLVHRFADEIKPVRIPTGDWPDRKSLRYYHMLLADDILRRKIKLGGARYQLLFPTHGSKTLSLGNDFGWLHYTWIDVGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSNHWCDNGSNCKSSQQQCPYMVSYLSDNTSSSGLLVEDILHLQSGSGLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLANSGLIHNSFSLCFNEDDSGRMFFGDQGPTIQQSTPFLPLDGLYSTYIVGVDSSCIGNTCLKMTSFKAQIDSGTSFTFLPGHAYGVIAEEFDQQVNGSRSSFEGSPWEYCYVSSSKELPKVPSLTLVFQQNNSFVVYNPVFVFYGNEGVVGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSVGKRMPLSPNETSPNPLPSDEQQRTNGHAVAPAVAGRAPHKSSAALSRMNSSFRVYWHCYFFLLFQLVSASY* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1510 528 Gene3D Acid Proteases 287 454 IPR021109 -
Vra2g1510 528 PANTHER ASPARTYL PROTEASES 16 469 IPR001461 GO:0004190|GO:0006508
Vra2g1510 528 PRINTS Pepsin (A1) aspartic protease family signature 110 130 IPR001461 GO:0004190|GO:0006508
Vra2g1510 528 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Vra2g1510 528 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Vra2g1510 528 MobiDBLite consensus disorder prediction 456 482 - -
Vra2g1510 528 Pfam Xylanase inhibitor N-terminal 105 286 IPR032861 -
Vra2g1510 528 Gene3D Acid Proteases 91 286 IPR021109 -
Vra2g1510 528 MobiDBLite consensus disorder prediction 456 492 - -
Vra2g1510 528 SUPERFAMILY Acid proteases 98 453 IPR021109 -
Vra2g1510 528 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 16 469 - -
Vra2g1510 528 Pfam Xylanase inhibitor C-terminal 326 448 IPR032799 -
Vra2g1510 528 ProSiteProfiles Peptidase family A1 domain profile. 104 448 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1510 Vra-Chr2 23064360 23069069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1510 97 455 Miscellaneous Gene Families AT1G44130 29.167 4.13e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1510 - - gmx:100782209 948.347