Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1490 ATGGGAAAAAGGCAATCTTTACGCAACAAAGCAACCAACTTTGTTTCTGTCCTTCTCAACCCCATCTCGGACTCCGACGCTCCCAAACCCTCCAAGCACCCTCCACCCACTCCAACACCAACACCTCCTTCCGGAGAAGTAGGTGGATCAGAGAATGATGAAGAAGTTAACCGTGGTTTAGCTGATGGGCCTGATACTTCATCCTTCACTGCGTTTCTCTATTCTTTTTTGTCTTCCTCTGACCCTGGAGATAATGCAAACTCGCACGCCCAGAGTGATGATCGCAAAGGTGCTGCACCTGATCACAACCCTTTACCAGACTCGTTGCTGAAGGAAAATGTTGCGAGGAAAAGTTTGTTTTCCAAAAGCAAGCAATCACTTGGAAGAGCCATTCGCAAAATTGGTGGATTTCGCTATCATGATCGCAGAGATAACCTTGAAATGAAATTGGACGACGGGAGTGGCTCTAAGGTTTCTGGTGTTGTTGAGATGAGGCGTATTGAACCTGTGCAAGACTCTGTCACTGCGCCTTTGGATGATCTTCCTGAAATTTCTGAACCTTCGGTTCTCCTTTCAGATAGTATGAGGAATGTTCTATATGTTTCTCTTCCACCGCTTATTCACGGAAGGAAATGGTTGTTGTTGTACAGCACTTGGAGGCATGGTATATCACTTTCCACTCTTTACCGGAGAAGCATGATTTGGCCTGGATTGAGTTTGCTGATTGTTGGAGATAAAAGAGGAGCAGTATTTGGCAGCATTGTTGAAGCACCTCTCAGATCATCTAGCAAGAAGAAATACCAGGGAACAAACAATACATTTGTTTTCACAAATATCTCTGGTCACCCTGTCATATATCGCCCAACAGGAGTCAATCGCTATTTCACACTTTGCAACACTGACTATTTAGCAATTGGTGGAGGAGGTCATTTTGCACTTTATCTGGATGGTGATCTATTGAATGGTTCAAGTTCAGTCTCAGAAACTTATGGGAATCCTTGCCTTGCAAATTCTGAAGATTTTGAAGTGAAGGAAGTAGAGTTATGGGGCTTTGTATATGCTTCAAAATATGAGGAAGTGCTAGCAATGAGCAGAACAGAAGCACCTGGGATCTGCCGATGGTGA 1125 0.4418 MGKRQSLRNKATNFVSVLLNPISDSDAPKPSKHPPPTPTPTPPSGEVGGSENDEEVNRGLADGPDTSSFTAFLYSFLSSSDPGDNANSHAQSDDRKGAAPDHNPLPDSLLKENVARKSLFSKSKQSLGRAIRKIGGFRYHDRRDNLEMKLDDGSGSKVSGVVEMRRIEPVQDSVTAPLDDLPEISEPSVLLSDSMRNVLYVSLPPLIHGRKWLLLYSTWRHGISLSTLYRRSMIWPGLSLLIVGDKRGAVFGSIVEAPLRSSSKKKYQGTNNTFVFTNISGHPVIYRPTGVNRYFTLCNTDYLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLANSEDFEVKEVELWGFVYASKYEEVLAMSRTEAPGICRW* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1490 374 Pfam TLD 214 351 IPR006571 -
Vra2g1490 374 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 368 - -
Vra2g1490 374 SMART 109ultra 188 352 IPR006571 -
Vra2g1490 374 MobiDBLite consensus disorder prediction 28 43 - -
Vra2g1490 374 MobiDBLite consensus disorder prediction 1 20 - -
Vra2g1490 374 PANTHER TLD-DOMAIN NUCLEOLAR PROTEIN 1 368 - -
Vra2g1490 374 MobiDBLite consensus disorder prediction 1 65 - -
Vra2g1490 374 ProSiteProfiles TLDc domain profile. 189 352 IPR006571 -
Vra2g1490 374 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1490 Vra-Chr2 22848015 22851625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1490 211 360 EF-hand Containing Proteins AT5G06260 30.625 4.51e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1490 - - gmx:100804124 622.854