Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1478 ATGGCTAGTGCAGGAGGCTATGGAGATGCAAACCAAAAGGTAGATTACGTGTTCAAGGTGGTGCTTATAGGCGATTCAGCGGTGGGGAAGTCGCAGATACTTGCGCGATTCGCGAGAAATGAGTTCAGCTTGGATTCGAAGGCCACAATCGGTGTCGAGTTCCAAACCCGCACTTTGGTGATTCAGCACAAGAGCGTCAAGGCTCAGATCTGGGACACCGCTGGACAAGAACGATATAGAGCAGTCACAAGTGCATACTACAGGGGTGCTGTCGGGGCAATGCTGGTTTATGACATCACAAAACGTCAAAGCTTCGATCACATACCTCGCTGGTTAGAAGAACTGCGGAACCATGCCGATAAGAATATAGTCATTATTCTTATAGGAAACAAAAGTGATCTGGAGAACCAGCGTCAAGTACCCACAGACGATGCAAAAGAATTTGCCGAGAAAGAAGGCTTATTTTTCTTGGAGACTTCAGCGCTGGAATCGACTAACGTTGAAACAGCCTTCATGACGGTTTTGACAGAAATATTCAACATTGTTAACAAGAAGAACCTAGCGGCTGGTGATAGTCAGGGAAATGGGAACTCAGCATCTCTGTCTGGCAAGAAGATTATTGTTCCTGGTCCTGCTCAAGAAATCCCCAAGGGGAACATGTGTTGTCAGTAA 672 0.4658 MASAGGYGDANQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHADKNIVIILIGNKSDLENQRQVPTDDAKEFAEKEGLFFLETSALESTNVETAFMTVLTEIFNIVNKKNLAAGDSQGNGNSASLSGKKIIVPGPAQEIPKGNMCCQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1478 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 186 IPR027417 -
Vra2g1478 223 SMART rab_sub_5 18 181 - -
Vra2g1478 223 SMART rho_sub_3 20 177 IPR001806 GO:0003924|GO:0005525
Vra2g1478 223 SMART ras_sub_4 15 181 - -
Vra2g1478 223 ProSiteProfiles small GTPase Rho family profile. 11 182 - -
Vra2g1478 223 PANTHER - 1 222 - -
Vra2g1478 223 PRINTS Transforming protein P21 ras signature 18 39 - -
Vra2g1478 223 PRINTS Transforming protein P21 ras signature 41 57 - -
Vra2g1478 223 PRINTS Transforming protein P21 ras signature 59 81 - -
Vra2g1478 223 PRINTS Transforming protein P21 ras signature 121 134 - -
Vra2g1478 223 PRINTS Transforming protein P21 ras signature 156 178 - -
Vra2g1478 223 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 222 - -
Vra2g1478 223 Pfam Ras family 19 178 IPR001806 GO:0003924|GO:0005525
Vra2g1478 223 ProSiteProfiles small GTPase Ras family profile. 11 208 IPR001806 GO:0003924|GO:0005525
Vra2g1478 223 ProSiteProfiles small GTPase Rab1 family profile. 13 222 - -
Vra2g1478 223 Gene3D - 10 208 IPR027417 -
Vra2g1478 223 TIGRFAM small_GTP: small GTP-binding protein domain 17 174 IPR005225 GO:0005525
Vra2g1478 223 SMART arf_sub_2 1 185 - -
Vra2g1478 223 SMART ran_sub_2 23 220 - -
Vra2g1478 223 CDD Rab11_like 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1478 Vra-Chr2 22747805 22751481 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1478 K07904 - gmx:100527786 424.861