Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1477 ATGGGGAGAGGAAAAGGAGGGAAGAAGAGTCGCACTCAAAGAAAGCATTTCCAAGAGAGCAGAGAAAATGTATGGAACTCCAAACGTCCTAGATCAGATTCAGATCCTATTCCTTTCTCCAATCCCTTCGCTACTCAGAACCTCGCTTTCGATCACTATTACAAGGATCAAGGAATCGTGTCGTCGCAAGAATGGGATGCATTCGTGCAACTTCTCCGAACTCCTTTGCCCGCAGCTTTCAGGATCAATTCCACTAGCCGGTTTTGTGCGGATATTCGTTCCCAACTAGAGAATGATTTTGTGCACTCTCTTCAGGCTGAGGTTGAGGAAGGGGATGATACAGAGGCTATTTTACCTTTGCCATGGTATCCTGATAATCTTGCTTGGCATTCGAATTTTTCGCGTAAGCAGCTCAGGAAGAACCAAACACTCGGGAGGTTTCATGAATTCTTAAAGATAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTACCTCCCCTGTTTTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCAGCGCCAGGTTCAAAAACATTTCAATTACTTGAGATTTTACATCATTCAACTAAAGTAGGATCTCTGCCCGAAGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGCAATCTTCTCATTCACCAAACCAAACGGGTGTGCACAGCCAACCTGATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTCTTAGAAAAACATTATGATAAAATGGAGCTAGATCAAGAAGCCCAGTTATTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGTGGAGATGGCACCCTTCGCAAGGCCCCTGATCTGTGGAGGAAATGGAACACAGGGACTGGAAATGGCCTTCATAACCTACAAGTTCTAATTGCAATGCGAGGTTTATCTTTACTTAAAGTTGGTGGAAGGATGATTTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCGGTTGTTGCAGAGGTTTTGCGAAGGTGTGGAGGATCCATCGAACTTGTAGATGTCTCTAGTGAACTTCCCCAACTCACTCGTCGACCAGGTCTTAAGAGATGGAAGGTATGTGACAAAGGCAAGTGGTTCATCTCCAGCAAAGATGTTCCCAAGTTTCGTAGAAATGTAGTTCTTCCCAGCATGTTTCCAAGTGGCAGAAGCTATCAGGATGTTGGTGATAGTAATTGTAATATCATCATGGAAGGTGATATTAATACTGATGATGTTAAGGGACATACTGAAGATGATACCCAAGCAATGGAGAATCCTGCTATGCTCAAATTTACTGAGGAAGATTCCGATTTCCCTCTAGAGCGGTGCATGAGGTTTGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTTCTGCAGAAAGTTTCTGCTCTTCCTGCAATCCAGGTAAAACCTAGAAAAGAAGTTGGGAAACAGGTTGACACAGCAAACCAGGGCAATGAGGATGCACACGAACTGCATGCTAATCCATTGGAAAATATATCTGAAGGAATTTCAGAGGCTAATGTAAATGAAAATGAACCTAATGAAACAGATTTGAAGGTTAATTCTGTTCCATGTGAAGAAGCGGATTTCAAGGAAGCCCAAGAACCCTGCAGTGTAGAAATCATAACAAAGAATACTCCAGGCAAAAGGAAACTGCAGTTTCAAGGAAAATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGAAGTTATTAACAGCATAAAGGTATTTTATGGCATTGATGATCAATTTCCATTCAATGGTCACCTTGTAACAAGAAACAGTGATACAAGTCACGTGAAAAGAATTTACTATATATCCAAGTCAGTCAAAGATGTTCTGGAGTTGAACTTCTCAGTGGGGCAACAACTTAAAATAACTTCTGTTGGTCTGAAGGTTTTTGAAAGACAAACTTCATGTGAAGGAAGGTCTGCACAATGTTCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTCCCTCACGTCTCCAAACAGATTCTACGTGCATCTGTAATAGATTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTGGATGCCAAGTTCGGAGAAAGTGCTGCAAACCTAATGCCCGGCTGTTGCGTGATAGTTTTGGGTGAAGGGAGCAGAGTTGCTGCAGGGACCCTCCAAGTGGACGAGTCAACTGTAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTGTCATGGTTGGTGCATTGGAATGCCAAGAACTGCTCCAAAGGCTTTTAATGCGTCTAGATACACAAACAGAAAAGGACTCCTCCATGCATGAGGACCAACCGTTTGGTACCAAGGGAGATGAAGCACAAGTGGCAAACGATAAAAATGAAGAAGTGGGAGTTAATGGGTGTTAG 2460 0.4232 MGRGKGGKKSRTQRKHFQESRENVWNSKRPRSDSDPIPFSNPFATQNLAFDHYYKDQGIVSSQEWDAFVQLLRTPLPAAFRINSTSRFCADIRSQLENDFVHSLQAEVEEGDDTEAILPLPWYPDNLAWHSNFSRKQLRKNQTLGRFHEFLKIENEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHHSTKVGSLPEGMVIANDLDIQRCNLLIHQTKRVCTANLIVTNHEAQHFPGCLLEKHYDKMELDQEAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGLSLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSELPQLTRRPGLKRWKVCDKGKWFISSKDVPKFRRNVVLPSMFPSGRSYQDVGDSNCNIIMEGDINTDDVKGHTEDDTQAMENPAMLKFTEEDSDFPLERCMRFVPHDQNTGAFFIAVLQKVSALPAIQVKPRKEVGKQVDTANQGNEDAHELHANPLENISEGISEANVNENEPNETDLKVNSVPCEEADFKEAQEPCSVEIITKNTPGKRKLQFQGKWRGIDPVVFFKDEEVINSIKVFYGIDDQFPFNGHLVTRNSDTSHVKRIYYISKSVKDVLELNFSVGQQLKITSVGLKVFERQTSCEGRSAQCSFRITSEGLPLILPHVSKQILRASVIDFKHLLQYRAVKFADFVDAKFGESAANLMPGCCVIVLGEGSRVAAGTLQVDESTVAIGCWKGRASLTVMVGALECQELLQRLLMRLDTQTEKDSSMHEDQPFGTKGDEAQVANDKNEEVGVNGC* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1477 819 MobiDBLite consensus disorder prediction 1 40 - -
Vra2g1477 819 MobiDBLite consensus disorder prediction 785 809 - -
Vra2g1477 819 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 68 480 IPR001678 GO:0008168
Vra2g1477 819 ProSitePatterns NOL1/NOP2/sun family signature. 271 282 IPR018314 GO:0003723|GO:0008168
Vra2g1477 819 MobiDBLite consensus disorder prediction 785 819 - -
Vra2g1477 819 PRINTS RNA (C5-cytosine) methyltransferase signature 183 193 IPR023267 GO:0001510
Vra2g1477 819 PRINTS RNA (C5-cytosine) methyltransferase signature 272 284 IPR023267 GO:0001510
Vra2g1477 819 PRINTS RNA (C5-cytosine) methyltransferase signature 322 338 IPR023267 GO:0001510
Vra2g1477 819 PRINTS RNA (C5-cytosine) methyltransferase signature 462 479 IPR023267 GO:0001510
Vra2g1477 819 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 480 IPR029063 -
Vra2g1477 819 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 793 IPR023267 GO:0001510
Vra2g1477 819 Gene3D Vaccinia Virus protein VP39 46 389 IPR029063 -
Vra2g1477 819 MobiDBLite consensus disorder prediction 13 29 - -
Vra2g1477 819 Pfam 16S rRNA methyltransferase RsmB/F 173 348 IPR001678 GO:0008168
Vra2g1477 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 129 150 IPR023270 GO:0016428
Vra2g1477 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 356 375 IPR023270 GO:0016428
Vra2g1477 819 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 646 658 IPR023270 GO:0016428
Vra2g1477 819 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 1 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1477 Vra-Chr2 22740274 22746814 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1477 K15334 - gmx:100808598 1381.7