Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1465 ATGCTTTTGAAGCCCACATTCTTGATGGGACTTGTTTTCACCAAATGGGCATGCGCATTCCTACTCTGCTGTTGTCTCATCACTTCTGGGGTATATTCAGTGGAGGGTTTACATGGGAGTTCTAAAGTGAGAGGAGTGAACTTAGGAGGGTGGCTGGTCATCGAAGGTTGGATCAAGCCTTCACTATTCGATGGCATTGCCAATGGAGACATGCTTGATGGGACAGAGGTGCAATTTAAGTCAGTGACGTCGCAGAAGTATGTATCTGCCGAGAATGGGGGAGGAATGAATGTGACAGTTGACAGGGATGTTCCATCTTCATGGGAAACCTTCAGGTTATGGAGAACATCTGAATCAGAATTTCAATTTCGTACCTCAGAGGGTCAATTTCTTACGTGTGATGGTGGAGGCCACTTTGTCTCTGCAACAGCAAAATCTCCTTCAACGTATGAGACATATGAAATTGAGCGGAGTGGTAAAAATAGGATTCACCTCAAGATAAAGGGTGGAGCATATCTTCAGGCTACAACCGATGGTCAGCTTTCAGCGAACTACCCAGGAACACCAGGATGGGATGATAATGCTGCCACGTTTGAAATGACAGTTGTGTCAAATAGCTTGCATGGAGATTACCAGCTAGCAAATGGATATGGGCATAATCGGGCAAAAGATGTTCTTCGGAGACATAGAAATAGCTTTATCACAATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCGGGTCCATATATCGGAGGAACTCTTGAAGCTCTAGATAATGCATTTTTATGGGCACAAGAATATGATATCAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCTCAAAATGGAATGGAGCATAGTTCAAGCAGAGATGGATTTACGGGCTGGCCAACTTCCCCAGATTACATTTCTGATTCATTACATGTTATTGAATTTTTAGTTTCAAGATATGCAAAACACCCTGCCTTGCTGGGAATTGAGCTATTGAATGAACCATCAGCTGGCACAGTTTCATTAGATGTTTTGATTCCGTATTACAAGCAGGGCTACCAAATTGTTCGCAAATACTCTTCATCGGCTTACGTGATAATCTGTCAGAGAATTGGAGTTGCAGATCCTCTGGAACTATATCAAGCCAACATAGGATCTCACAACATAGTTTTGGATTTACATTTCTACAATCTCTTTGACCCATTCTTTGTTAACATGAGTGCTGTGGATAATATTCAATACATATACAAAAGCCGGGAAGGTCAACTGCAGGCCTTAAACAATTCAGATGGCCCACTTGTTTTAGTTGGAGAGTGGGTTAATGAGTGGAATGTGACAAAGGGATCCCAAAAAGACTATCAGGATTTTGGAAGGGCACAGTTAGATGTCTATAATGCAGCTTCCTTTGGATGGTGTTATTGGACAGTAAAAAATGACAGAGAGCACTGGGATTTTGAATGGAACATTAGGAACAACTATCTTCAATTAGGTAACTCATCCAGAAAACAAAGCTTGAACATTCTAGGACTGTTAGGATTGGTATTCAGCTGGTTTTGTCTACTTCAATTTTTGTGA 1626 0.4139 MLLKPTFLMGLVFTKWACAFLLCCCLITSGVYSVEGLHGSSKVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGTEVQFKSVTSQKYVSAENGGGMNVTVDRDVPSSWETFRLWRTSESEFQFRTSEGQFLTCDGGGHFVSATAKSPSTYETYEIERSGKNRIHLKIKGGAYLQATTDGQLSANYPGTPGWDDNAATFEMTVVSNSLHGDYQLANGYGHNRAKDVLRRHRNSFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPGPYIGGTLEALDNAFLWAQEYDIKCIIDLHAAPGSQNGMEHSSSRDGFTGWPTSPDYISDSLHVIEFLVSRYAKHPALLGIELLNEPSAGTVSLDVLIPYYKQGYQIVRKYSSSAYVIICQRIGVADPLELYQANIGSHNIVLDLHFYNLFDPFFVNMSAVDNIQYIYKSREGQLQALNNSDGPLVLVGEWVNEWNVTKGSQKDYQDFGRAQLDVYNAASFGWCYWTVKNDREHWDFEWNIRNNYLQLGNSSRKQSLNILGLLGLVFSWFCLLQFL* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1465 541 PANTHER FASCIN 32 520 IPR010431 GO:0007015|GO:0051015
Vra2g1465 541 Pfam Cellulase (glycosyl hydrolase family 5) 234 496 IPR001547 GO:0004553|GO:0071704
Vra2g1465 541 Pfam Fascin domain 94 185 IPR022768 GO:0030674|GO:0051015
Vra2g1465 541 SUPERFAMILY (Trans)glycosidases 40 518 IPR017853 -
Vra2g1465 541 ProSitePatterns Glycosyl hydrolases family 5 signature. 344 353 IPR018087 GO:0004553|GO:0005975
Vra2g1465 541 PANTHER - 32 520 - -
Vra2g1465 541 Gene3D - 55 194 - -
Vra2g1465 541 SUPERFAMILY Actin-crosslinking proteins 77 188 IPR008999 -
Vra2g1465 541 Gene3D Glycosidases 195 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1465 Vra-Chr2 22647828 22652693 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1465 - - vra:106755616 1131.32