Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1456 ATGAAGTGCTTCTCCTCATCCTCCGTCTCTCTCTTTATTTTCCTTTGTCTATGTTTTGAGAGTGTGTGGTCTCAAAATGTGTCGGAGAGTGATCGACAGAAAGCTAGCATTCCACCAAGAGGTTGGAACTCCTATGATTCCTTTTCCTGGACAATATCTGAAGAAGAATTCTTGCAGAGTGCTGAAGTAGTTTCTCAGCGTCTCCATGATCATGGATATGAGTACGTTGTGGTGGATTACCTCTGGTATAGAAGGAAAGTTGAGGGTGCTTATCATGATTCTCTTGGATTTGATGTGATTGATGAATGGGGGAGGATGCTTCCTGATCCAGGAAGGTGGCCTTCTTCTGGAAATGGGAAAGGATTTTCTGAAGTAGCTAATCGAGTACATGACATGGGTTTGAAATTTGGGATTCATGTCATGAGAGGGATAAGTACACAAGCTGTGAACACAAACACCCCTATCCTTGATACAAAAACGGGAGCTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAAAGACATAGCAGTCCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTGAATACAAAGTTGGGAGCAGGAAAAGCTTTTCTGAGATCCCTATACGAGCAGTATGCTTCATGGGATGTTGATTTTGTGAAACATGACTGTGTATTCGGGGATGACTTTGATTTAAATGAAATAACCTATGTTTCTGAGGTTCTCAAGCAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACTAGTGTGACACCAGCCATGGCCAAGGATGTCCTTGGAATGGTCAATATGTATCGTGTAACAGGAGATGACTGGGATACATGGGGGGATGTCAAATCACATTTTGATATTGCCAGGGATTTCTCAAATGCTAATATGATAGGAGCAAAAGGTTTAACGGGGAAATCTTGGCCTGATTTGGATATGCTACCCTTTGGATGGCTAACTGATCCTGGTTCAAATGAAGGTCCACATAGGTTTAGTCGTCTCAATCTGGAAGAAAAGAAGACACAGATGACTCTTTGGTCTATGGCAAAGTCTCCCCTTATGTATGGTGGGGATGTTCGGAAGATTGATCCTAGTACATATGATATTATCACAAATCCCACCCTTCTCGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCCTTATATCACAACTGTGAAGAGTGAAGATCAGGATCTTAGTTTGAGAAGAAGTGGCAAAGAAATAAAAACAACTTTCACCCATTCATTAGGCCTCACAAAGTGCACCGAGTCAAAGGCAATAGGTTGGGCTAGTGAAAGGCTTAACCTATATCTTGAAAGAATATGTTGGAAAAGGAGTTTAGGAAACAAGCATCTTGCCCCCTTCTGTGTGCTCAAAAGAGAACTCTACTTCCCATTAGATGAAGTGAGTATGTATCAAGAGTATCATCATGGCAAACATCATTTAGTTGCAACAAACAGATTAAAGTTTTGCTTGGATGCTTCTCCAAAACGCAAGCTCACCTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGGTGGGATTCAAATCAGATGTGGGAATTGAATCCTAATGGGACCCTGGTCAATAGTTATTCTGGCTTGTGTGCAACAGTAGAGTCCAGCGAAGATACTATTAATTCCGGTGGCTTGCGCTCTTGGATTGCTACAGGAAGAAAAGGAGAAATCTATATTGCTTTGTTCAATCTAAGTGAACAGAAGACAGTAATGTCTGCACAGGCATCTGACCTGGCTAAGTTTCTTCCTGCCAGAGACTTCAGAGACTTCAGTTCTTGTGAGGGCAGTGAAGTGTGGAGTGGAAATGCTGTAGAAATAACACAAGGGAGGCTATCAACAGCAGTGGAAATGCATGGAAGTGCACTAATTGTTCTGAAATGCAGCTAA 1926 0.42 MKCFSSSSVSLFIFLCLCFESVWSQNVSESDRQKASIPPRGWNSYDSFSWTISEEEFLQSAEVVSQRLHDHGYEYVVVDYLWYRRKVEGAYHDSLGFDVIDEWGRMLPDPGRWPSSGNGKGFSEVANRVHDMGLKFGIHVMRGISTQAVNTNTPILDTKTGAAYQESGRVWYAKDIAVPERACAWMPHGFMSVNTKLGAGKAFLRSLYEQYASWDVDFVKHDCVFGDDFDLNEITYVSEVLKQFDRPIVYSLSPGTSVTPAMAKDVLGMVNMYRVTGDDWDTWGDVKSHFDIARDFSNANMIGAKGLTGKSWPDLDMLPFGWLTDPGSNEGPHRFSRLNLEEKKTQMTLWSMAKSPLMYGGDVRKIDPSTYDIITNPTLLEINSFSSNNMEFPYITTVKSEDQDLSLRRSGKEIKTTFTHSLGLTKCTESKAIGWASERLNLYLERICWKRSLGNKHLAPFCVLKRELYFPLDEVSMYQEYHHGKHHLVATNRLKFCLDASPKRKLTSKEFKRGTFSPCRWDSNQMWELNPNGTLVNSYSGLCATVESSEDTINSGGLRSWIATGRKGEIYIALFNLSEQKTVMSAQASDLAKFLPARDFRDFSSCEGSEVWSGNAVEITQGRLSTAVEMHGSALIVLKCS* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1456 641 Gene3D - 550 640 IPR013780 -
Vra2g1456 641 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Vra2g1456 641 Pfam Alpha galactosidase A 51 147 IPR002241 GO:0004553|GO:0005975
Vra2g1456 641 Pfam Alpha galactosidase A 208 383 IPR002241 GO:0004553|GO:0005975
Vra2g1456 641 PANTHER ALPHA-GALACTOSIDASE 3 638 - -
Vra2g1456 641 SUPERFAMILY (Trans)glycosidases 34 383 IPR017853 -
Vra2g1456 641 Pfam Alpha galactosidase C-terminal beta sandwich domain 556 638 IPR041233 -
Vra2g1456 641 Gene3D Aldolase class I 16 385 IPR013785 -
Vra2g1456 641 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 638 IPR002241 GO:0004553|GO:0005975
Vra2g1456 641 CDD RICIN 479 551 IPR000772 -
Vra2g1456 641 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Vra2g1456 641 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Vra2g1456 641 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Vra2g1456 641 SUPERFAMILY Ricin B-like lectins 494 561 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1456 Vra-Chr2 22596678 22601788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1456 2 467 Glycoside Hydrolase AT3G26380 65.957 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1456 - - gmx:100777954 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1456 2 22596678 22601788 Vra2g1456 2 22596678 22601788 ECH