Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1453 ATGAATCCGGAGATAGAGACTTGGACAGTTTTGGTTGGTGTTCTGTGCATCTTGGTGTTCATTGTGAAGGAGTTTGTTATGGGGGGAAAGAGTTCGAAAGGAGGTGGTAGGAGGTATGATTATGGTGCTTCTTCATCTTCATGGGATAATAATAACTATGGTGGATACCCTCCACAATCACCATATCCTTCTTATCAAACACCTCGGCACCACCATGCATCGGCATCAGCTCCATTTTATGATAATGCTCAGCCGAAAAGGAAGTTGGATAGGAAGTATTCAAAGATAGCTGATAACTACCGTTCCTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTGGAAGTGGCCAAAACCCGTATGAGCAAGCAATTTCTATTATTGGGAAAACTCTATCAGCTTTTGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCGTCTACACATGACCAAGATGTATTTAGTTTCTTTTCGGAAGAGAGGTTCTGCAATGGATTTGAGGAAGTTCTATCACGATACAGACAAATTATTCCTTACCTCAAACTTGCAGGACCCACATCATTTGCCCCTATTATTGAAATGGCTATGACAATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTGATAATTGCAGATGGACAGGTGACTAGAAGCGTTGACACAGAAAATGGCAACTTGAGTCCACAAGAGAAGAACACAATAGATGCAATAGTTAAAGCAAGTGAGTATCCACTATCAATAGTTTTAGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACAAGGAATGTAGATTCAAGCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAGCTTGGCATATTGGGTGCAAGGAGGGGTCATTCACCAGACAGGGTTGCTCTGCCTCCACCTCTTTATGGTAGGACTTCTTCCAGCGTCAGCACAAAATCGACAAGGTCAAACAGTTTTCAGCAGAGAGCACCTACACACACTAGCTATGACAACAGTGTTCAAACGGAGGCATCTGCAAGTTCTTTATATGATAATAAGCTTTGTGCGATTTGCCTCACCAATGCGAAAGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAGTGTGGAGAATACCTCCAATTCTGTCCCATTTGCCGGAGCACGATCAAAACCAAAATAAGGCTTTACTAG 1389 0.4168 MNPEIETWTVLVGVLCILVFIVKEFVMGGKSSKGGGRRYDYGASSSSWDNNNYGGYPPQSPYPSYQTPRHHHASASAPFYDNAQPKRKLDRKYSKIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLSRYRQIIPYLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTENGNLSPQEKNTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTRNVDSSRKETDFALSALMEIPSQYKATIELGILGARRGHSPDRVALPPPLYGRTSSSVSTKSTRSNSFQQRAPTHTSYDNSVQTEASASSLYDNKLCAICLTNAKDMAFGCGHQTCCECGEYLQFCPICRSTIKTKIRLY* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1453 462 CDD RING-HC_RGLG_plant 418 462 IPR045317 GO:0061630|GO:0070534
Vra2g1453 462 ProSiteProfiles Zinc finger RING-type profile. 419 452 IPR001841 -
Vra2g1453 462 MobiDBLite consensus disorder prediction 55 80 - -
Vra2g1453 462 SMART VWA_4 117 320 IPR002035 -
Vra2g1453 462 MobiDBLite consensus disorder prediction 374 402 - -
Vra2g1453 462 MobiDBLite consensus disorder prediction 55 71 - -
Vra2g1453 462 Pfam Copine 142 355 IPR010734 -
Vra2g1453 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 462 IPR013083 -
Vra2g1453 462 CDD vWA_copine_like 96 346 IPR010734 -
Vra2g1453 462 PANTHER COPINE FAMILY PROTEIN 1 27 462 - -
Vra2g1453 462 MobiDBLite consensus disorder prediction 362 402 - -
Vra2g1453 462 Pfam Zinc finger, C3HC4 type (RING finger) 416 456 - -
Vra2g1453 462 SUPERFAMILY vWA-like 118 301 IPR036465 -
Vra2g1453 462 PANTHER RING-FINGER PROTEIN 27 462 - -
Vra2g1453 462 SUPERFAMILY RING/U-box 411 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1453 Vra-Chr2 22573971 22578041 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1453 K16280 - gmx:100798816 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1453 2 22573971 22578041 Vra2g1453 2 22573971 22578041 ECH