Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1450 ATGGGTAGCAAAGGTGGAATTTTCCGTTATGCAGATGGAGTTGACAAATTTCTGTTACTGTTTGGGACATTGGGTTGCATTGGAGGTGGATTACAAACCCCCATGACAATGCTTGTTCTTGGTAGTTTGATAAATGATTATGAAGGTGGATCTGAACATTCCGTGCCCGACCAGGTTATAGACAAGTACGCTCTAAGGCTGCTTGGTGTTGCAATTGGGGTTGCTTTATCCTCCTTTATAGAAGGGGTATGTTGGACAAGAACTGCAGAGAGACAAACTTCCCGCATGAGAACTGAATACCTTAAATCAGTCCTAAGGCAAGAGGTCGGTTTCTTCGACAAGCAAACCGACTCTTCCACAACTTTCAAAGTTATTGCCACCATAACTTCTGATGCTCAAACAATCCAAGATACCATGGCTGATAAGGTGCCCAATTGTCTGGGTCACCTCTCAGCATTTTTCTCTAGCTTTATAGTGGCACTCTTCCTTTCATGGAGACTTGCAGTGGCTGCTTTTCCATTTTCAATCATGATGATCATGCCGGCAATCATATTTGGGAAGGCCATGAAAGAACTGGGAAATAAAATGAAGGATGCATATGGAGTTGCTGGTAGCATAGCTGAACAAGCAATCTCTTCAATTCGCACTGTTTATTCATATGTGGGCGAGAAGCAAACAATGCAAGCGTTCAACTCGAGTCTTGAAAAAAGTATGGAGATTGGCATAAAACAAGGTCAAATCAAGGGAGTGATAATCGGTAGCATTGGGTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGCAGTGTTCTGGTCAGGACAAAAGGAGAAAGTGGTGGTCCTGTGTTTTGTGCTGAGATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCAACAATAGCTACTACCCGGATTTTTGAGATGATTGATCGAGTGCCAAGCCTAAATTCTTACAGAGAAAAAGGAAAGGTCTTAACACATGCAAGAGGAGAAATCACATTTCAAGATGTTGAGTTTAGTTACCCATCAAGGCCAGATGCACTGATTCTCCAAGGACTTAATCTGAAGGTGCAGGCAGGAAAAACACTAGGCTTAGTTGGAGGGAGTGGTTCAGGCAAATCTACTATAATCTCTTTGCTTGAAAGATTTTATGATCCTGTTTACGGCGAGATATTGCTTGATGGATATGATATACAGACACTTCACGTTAAGTGGTTAAGGTCCCAGATGGGACTGGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAAAACATTCTATTTGGAAAGGAAGGAGCTTCAATGGATGGAGTTATAAGGGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTCAAACTTCCTGATGGATATGAAACTCAAGTGGGACAATTCGGTGCTCAGTTGTCTGGAGGACAAAAGCAAAGGATTGCCATTGCAAGGGCTTTGATAAGAGAACCCAAAATCCTGCTACTTGATGAAGCAACAAGTGCTTTGGATTCACAGTCCGAAAGACTAGTGCAGGAGGCCCTTGAGAAAGCTTCTAGAGGCAGGACAACGATTATCATAGCGCATCGCCTGTCAACAATTCGTAAGGCTGATTCAATTGTAGTTCTTCAATCAGGAAGAGTCGTTGAATGTGGTTCCCATGATGAGCTACTCCAACTGAACAATGGACAAGGAGGGGCTTACAGAAAAATGCTACAGCTGCAACAAGCGACAAGTCAAAACGAAATTGCATTGCATACAATAAACAAGACTTCCTTAGCTATGGAAAATCTTACAAGTCCAAATTCGAGATGGCAAAGTAGCCCAACTCATCATGCATTTAGCTCAACACAACCATTTAGTCCCATATATTCAATCAGTGTTGTAGGGTCTAGCTTTGATGACTACGACAGGGAAAACTTTGAGAAATCTTCACATGCTAACTTCTCTCAATGGCGTTTACTGAGAATGAATTCCCCTGAGTGGAGACATGCTTTGCTTGGTTGTTTAGGGGCCATTGGCTCTGGAATATGTCAACCAATTTACTCCTATTGCTTGGGAATAGTTGCATCAGTCTACTTTATAAAAGATGACTCTCTCATCAAATCAAAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATTGCTGTTGTCTACTTCATTTCAGGCCTCCTTCAACATTACAATTTTACCATTATGGGGGAGAGTTTGCTAAAAAGGGTGCGAGAAAATTTGCTAGAGAAGGTGTTGACTTTTGAGATGGGATGGTTTGATCAAGAGGAGAACGGAAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCCAACTTGGTCAAATCCCTTGTTGCAGAACGAATGTCATTGATAGTTAATATTTCTGTTATGGCTCTGTTGGCTTTTGTACTTAGTTTAATTGTTACGTGGAGGGTGGCAATAGTCATGATTGCAATGCAACCTTTGATCATTGCATGTTTCTACTCAAAAAACATTCTCATGAAAAGTATGGCAGGGAAAGCAAGAAGGGCTCAGAGAGAAGGTAGTCAATTAGCAATGGAAGCTACTGTTAACCACAGGACTATTGCTGCCTTTTCATCTGAGAAAAGGATTTTAAACTTGTTCAGAACTTCTATGGAGGGCCCTAAGAAGGAGAGCATCAAGCAATCATGGATTTCGGGTTCCATTTTGTCAGTCTCATATTTTGTAACAACAGCATCTATAACTTTGACTTTTTGGTATGGAGGCCGGTTATTGAATCGAAAGCTGGTGGATTCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATTGCAGAGACAGCAAGTGCAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTGCAGTATTTGCTATACTGGATAGGAAAAGTGAGATTGAACCGGAAGATCCTAGACATAGAAAGTGTAAAAGTTCTTTGAAGGGCCATATAAAACTTAGAGATGTCTTTTTCTCGTACCCAACAAGGCCAGACCAAATGATTCTCAAGGGCCTCAATCTTGATATTGAAGCAGGCAAAACAGTTGCATTAGTGGGACAAAGTGGCTCGGGTAAATCAACCATCATTGGCTTAATCGAAAGATTTTATGACCCCATGAAGGGATCCATATGCATAGACAATTGTGACATAAGGGAATTTAACTTAAGAAGTTTGAGAGCACATATTGCCTTGGTTAGTCAGGAGCCAACTCTCTTTGCAGGAACTATACGTGACAACATTGTGTATGGAAAAAAGGATGCATCAGAAGATGAAATAAGAAAGGCAGCACGTCTTTCAAATGCTCATGAGTTTATAAGTTCGATGAAAGATGGATACGATACTTACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGGCAGAAGCAGAGAATAGCCATTGCTCGAGCAGTACTTAAGAATCCTTCAATCCTTCTGCTAGATGAGGCAACAAGTGCTCTAGACAGTGTATCAGAAAATCTGGTGCAGGAGGCTCTGGAGAAAATGATGGTTGGAAGAACGTGTGTGGTTATAGCTCACCGTTTGTCAACAATACAGAATGTTGACTCCATAGTTGTTATTCAAAATGGGAAGGTGGTGGAACAAGGGTCACACTCGGAGTTATTGAGAATTGGATCAAATGGGGCCTATTACTCCTTGACTAGGCTACAACAAGACCACTCAACATGA 3732 0.4172 MGSKGGIFRYADGVDKFLLLFGTLGCIGGGLQTPMTMLVLGSLINDYEGGSEHSVPDQVIDKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQTDSSTTFKVIATITSDAQTIQDTMADKVPNCLGHLSAFFSSFIVALFLSWRLAVAAFPFSIMMIMPAIIFGKAMKELGNKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTMQAFNSSLEKSMEIGIKQGQIKGVIIGSIGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATIATTRIFEMIDRVPSLNSYREKGKVLTHARGEITFQDVEFSYPSRPDALILQGLNLKVQAGKTLGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHVKWLRSQMGLVNQEPILFATSIRENILFGKEGASMDGVIRAAKAANAHDFIVKLPDGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQEALEKASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGAYRKMLQLQQATSQNEIALHTINKTSLAMENLTSPNSRWQSSPTHHAFSSTQPFSPIYSISVVGSSFDDYDRENFEKSSHANFSQWRLLRMNSPEWRHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSLIKSKIRLYSSIFCCIAVVYFISGLLQHYNFTIMGESLLKRVRENLLEKVLTFEMGWFDQEENGSAAICARLATEANLVKSLVAERMSLIVNISVMALLAFVLSLIVTWRVAIVMIAMQPLIIACFYSKNILMKSMAGKARRAQREGSQLAMEATVNHRTIAAFSSEKRILNLFRTSMEGPKKESIKQSWISGSILSVSYFVTTASITLTFWYGGRLLNRKLVDSKHLLQVFLILMGTGRQIAETASATSDIAKSGRAISAVFAILDRKSEIEPEDPRHRKCKSSLKGHIKLRDVFFSYPTRPDQMILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSICIDNCDIREFNLRSLRAHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKAARLSNAHEFISSMKDGYDTYCGERGVQLSGGQKQRIAIARAVLKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQNVDSIVVIQNGKVVEQGSHSELLRIGSNGAYYSLTRLQQDHST* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1450 1243 Gene3D ABC transporter type 1, transmembrane domain 643 985 IPR036640 GO:0005524|GO:0016021
Vra2g1450 1243 Gene3D ABC transporter type 1, transmembrane domain 7 601 IPR036640 GO:0005524|GO:0016021
Vra2g1450 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
Vra2g1450 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 284 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra2g1450 1243 SMART AAA_5 371 557 IPR003593 -
Vra2g1450 1243 SMART AAA_5 1026 1212 IPR003593 -
Vra2g1450 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1238 IPR027417 -
Vra2g1450 1243 Gene3D - 334 586 IPR027417 -
Vra2g1450 1243 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016021
Vra2g1450 1243 PANTHER OS04G0481700 PROTEIN 11 1240 - -
Vra2g1450 1243 Pfam ABC transporter transmembrane region 677 943 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra2g1450 1243 Pfam ABC transporter transmembrane region 20 275 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra2g1450 1243 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524
Vra2g1450 1243 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1240 IPR039421 -
Vra2g1450 1243 SUPERFAMILY ABC transporter transmembrane region 663 983 IPR036640 GO:0005524|GO:0016021
Vra2g1450 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Vra2g1450 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra2g1450 1243 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Vra2g1450 1243 CDD ABC_MTABC3_MDL1_MDL2 999 1238 - -
Vra2g1450 1243 Gene3D - 986 1242 IPR027417 -
Vra2g1450 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Vra2g1450 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Vra2g1450 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Vra2g1450 1243 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Vra2g1450 1243 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Vra2g1450 1243 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1450 Vra-Chr2 22553571 22558673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1450 20 595 Calmodulin-binding Proteins AT2G36910 35.972 1.89e-104 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1450 K05658 - gmx:100804664 2167.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1450 2 22553571 22558673 Vra2g1450 2 22553571 22558673 ECH