Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1442 ATGGCAGCAACCATAGCAGCAACCATGGCCATAGTAAACACCAAGAGCCTAAAACTGCAACTCCCACCTTCAAAACCCATCTTTTCTCTCTTTTCCCATCTCAACCTTCCAAAGGGTCTAACCTCCACCGTTAACGCAACCGTGTCAGCGACAACATCTTCCATGGCGGGCACTGCAATCGCGGGGGCAGTTTTTTCCACCCTAGGATACTGCGACGCGGCTTTTGCGGCGTCGCAAATTGCCCAAATAGCGGAGGGCGACAACCGTGGGCTTGCGCTGTTGCTGCCGGTGGTTCCCGCCTTAGCGTGGGTGCTGTTCAACATTCTGCAGCCGGCGCTGAACCAGGTGAACCGCATGCGAAGCAGCAAGGGGGTCATGGTTGGGCTTGGGCTTGGACTCGGCACCTCTGGCTTGGTGTGGAGCCCAGAAGCGTCAGCGAGTGAGATGGGTCTGATTGCGGATGCTGCGGCGGGCAGTGACAACAGGGGTCAGCTTCTGCTGCTTGTGGTTGCACCGGCGATTGCGTGGGTTCTGTTCAACATTCTGCAACCAGCACTTAATCAGCTTAACAGAATGAGATCAAAATGA 588 0.5561 MAATIAATMAIVNTKSLKLQLPPSKPIFSLFSHLNLPKGLTSTVNATVSATTSSMAGTAIAGAVFSTLGYCDAAFAASQIAQIAEGDNRGLALLLPVVPALAWVLFNILQPALNQVNRMRSSKGVMVGLGLGLGTSGLVWSPEASASEMGLIADAAAGSDNRGQLLLLVVAPAIAWVLFNILQPALNQLNRMRSK* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1442 195 PANTHER - 1 194 - -
Vra2g1442 195 Pfam Photosystem II protein Y (PsbY) 160 192 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Vra2g1442 195 Pfam Photosystem II protein Y (PsbY) 87 119 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Vra2g1442 195 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 194 IPR038760 GO:0009523
Vra2g1442 195 Hamap Photosystem II protein Y [psbY]. 87 121 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1442 Vra-Chr2 22502364 22503220 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1442 K02723 - gmx:100814665 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1442 2 22502364 22503220 Vra2g1442 2 22502364 22503220 ECH