Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1427 ATGACGGAAAGTGAAGGAAAGCGTGCGAAAATGCTCAAAGAGAAGAAAGGTGGAAGCCTCCTCGTTTTCACCGGAGGTGCTGCGGTGCTCGCGATTGCGGCGAATCTCGCCATCGCTGCATTAAAGCACCACAAGGAAAAAAATGCAAAGAAGAAAGATCTTGCAGGTTCTAAGGTGCGTGTTAACCTATCTGCGCCTGAGATTCTTAAGTTAGCTGAACAAATCATTGCCAACTCGAAGAAGGTCCATAATTCTGTAGCGTCGGTGCCTCTCGACAAGGTTACATATGCAAATGTTATAGAACCTCTGGCAGAACTGCAAGCGCAGCAATTTCCACTGGTTCAGTCTTGTGTGTTTCAGAAAATGGTATCTACACGGGAGGATGTACGCAAGGCAAGTGCAGAAGCAGAGCGAAGAATAGATGATCATTTTGATGCGTGCAGCAAACGTGAAGATGTCTACCTTGTCATTAAAGCTTTTGCAGTAAGGGGCGAGAAGACAAATGCTGAAGCCAGGCGCTTTGTTCAAACTCTGGTGAGAGACTTTGAGCGAAATGGACTGAACCTCACTGCAAGCAAAAGAGAAGAACTGCAGCGTATAAGAGCTCAGATTGACGAGTTAAGCATTAAATATATCCAAAATCTCAATGACGATACGAAGATTTTCCTCTTCAGTGAATCAGAGTTAGTTGGATTACCTCCGGAGTTTCTCAAGGATTTAGAGAAATCGGAAAATGGGAAATTTAAAATTTCCCTGAGAAGTCATCACGTTGCAGCTGTTCTTCAATTTTGCAAGGTTGGAACTACTAGGCAGATGGTAGCAGGGGCATATGGGAAGCGGTGTGGGGAAACCAACATTTCTGTCTTGGAAAGCCTGGTGCAGCAGCGTCACAAATATGCTCGTTTACTTGGTTTTTCATGCTATGCAGAGTATGTCATCGATGTTAGAATGGCAAAGACTCCAAAAAAGGTGTTTGAGTTCCTGAAAGACATATCAGCAAGTTTAACTGACTTGGCCACGAAAGAACTTAATATGTTGAAAGATTTGAAGAAAAAAGAAGAAGGAGAGCTTCCATTTGGAATTGAGGACCTACTATATTATGTAAAACGGATTGAAGAACAGAGCTACGATTTGGATTTTGGAGAAATCAAGCAATACTTTCCGATTAGTGTGGTTCTATCTGGGATCTTCAAAATTGTCCAAGATCTATTTGGCTTAAGGTTTGAGGAGATTTCAGGAGATGTTTGGCATTGTGATGTTCGTGTTTTTACAGTGCTGGACTTGGGTTCTAGCGAACTCTTAGGTTATTGCTACCTTGATTTGTTCGCAAGGGAAGGAAAATATGGTCATACTTGTGTGTTGGCTCTCCAGAACAGTGCATTAACAATCAGTGGGGCAAAACAGATACCAGTTGCATTGCTAATATCTCAGTGTCAGAAGGAAGCTGATGGTAGTTCTGGATTATTGCGGTTTTCTGAAGTGGTCAGTCTTTTCCATGAGTTTGGCCACGTGGTTCAACAAATTTGTAACCGTGCATCGTTTGCCAGAGTTTCTGGATTGTGTGTTGATCCAGACTTTGTGGAAATTCCTTCTCTACTGTTAGAAAACTGGTGTTATGAAAGCTATTCTCTCAAGTTGATTTCGGGATTCCATCAGGATATTACAAAACCGCTGAAGGATGACATATGCAATTCAATTAAAAGATGGAGAACTTCTTTTTCTGCACTTAAATTGAAGCAAGATATTCTATGCTGTCTTTTTGACCAAATCATACATTCCACGGATAACATAGACGTGCAGGAATTATTCAAGCATCTTCATCCCATGGAGATGTTGGGCTTGCCCATACCAGAAGGAACCAATCCAGCGTCATATTTTCCTTCTACTGTCATAGGTTATGAGGCAGCTTGCTATAGTCGTATATGGAGTGAGGTTTGTGCTGCTGATATATTCGCCTCAAAGTTCTGCAACGATGTTTCAAACCAGCATGCCGGCATTCAATTCAGGAACAAGGTTTTGGCCACGGTCGGAATGAAAGATCCTAATGATGTCTTATCAGACTTTTTAGGAAGAGAACCATCAATCCAAGCTTACATTGAGAACAAATTCAATTATGTTTCGTAA 2124 0.4176 MTESEGKRAKMLKEKKGGSLLVFTGGAAVLAIAANLAIAALKHHKEKNAKKKDLAGSKVRVNLSAPEILKLAEQIIANSKKVHNSVASVPLDKVTYANVIEPLAELQAQQFPLVQSCVFQKMVSTREDVRKASAEAERRIDDHFDACSKREDVYLVIKAFAVRGEKTNAEARRFVQTLVRDFERNGLNLTASKREELQRIRAQIDELSIKYIQNLNDDTKIFLFSESELVGLPPEFLKDLEKSENGKFKISLRSHHVAAVLQFCKVGTTRQMVAGAYGKRCGETNISVLESLVQQRHKYARLLGFSCYAEYVIDVRMAKTPKKVFEFLKDISASLTDLATKELNMLKDLKKKEEGELPFGIEDLLYYVKRIEEQSYDLDFGEIKQYFPISVVLSGIFKIVQDLFGLRFEEISGDVWHCDVRVFTVLDLGSSELLGYCYLDLFAREGKYGHTCVLALQNSALTISGAKQIPVALLISQCQKEADGSSGLLRFSEVVSLFHEFGHVVQQICNRASFARVSGLCVDPDFVEIPSLLLENWCYESYSLKLISGFHQDITKPLKDDICNSIKRWRTSFSALKLKQDILCCLFDQIIHSTDNIDVQELFKHLHPMEMLGLPIPEGTNPASYFPSTVIGYEAACYSRIWSEVCAADIFASKFCNDVSNQHAGIQFRNKVLATVGMKDPNDVLSDFLGREPSIQAYIENKFNYVS* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1427 707 Coils Coil 190 210 - -
Vra2g1427 707 Pfam Peptidase family M3 262 700 IPR001567 GO:0004222|GO:0006508
Vra2g1427 707 PANTHER SACCHAROLYSIN 47 703 - -
Vra2g1427 707 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 63 700 - -
Vra2g1427 707 CDD M3A_TOP 69 700 - -
Vra2g1427 707 Gene3D Collagenase (Catalytic Domain) 388 537 IPR024079 GO:0008237
Vra2g1427 707 Gene3D Neurolysin, domain 3 194 699 IPR024077 -
Vra2g1427 707 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 47 703 IPR045090 GO:0004222|GO:0006508
Vra2g1427 707 Gene3D Endopeptidase. Chain P; domain 1 38 184 IPR024080 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1427 Vra-Chr2 22385609 22396381 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1427 K01392 - gmx:100793518 1209.9