Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra2g1412 | ATGAAACTAAGTCCAAGGGAGATCGAGAAACTAGACCTTCATAATGCTGGCTACCTTGCCCAGAAGCGTCTTGCTCGTGGTTTAAGACTCAATTATGTTGAAACTGTGGCTCTCATAGCAACTCAGATTTTGGAATTTGTGCGTGATGGGGACAAGACTGTTGCACAGTTAATGTCCATTGGGAGAGAACTTCTGGGAAGGAAACAAGTTCTTCCAGCTGTTCGACATCTCGTGGAAAGTGTTCAGGTTGAAGCCACCTTTCGTGATGGAACTAAGTTAGTCACCATTCATGACCCAATCGCTTCCGAGAATGGAAACCTTGAACTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCACTGGACAAGTTTACAGAGAACGAAGAAGATCATAGAATTCCAGGACAAATAATATTTGGAGGTGAAAATCTGATTCTTAACCCTGGAAGGCGTGCAATAAGTCTCAGAGTTGTCAACAAGGGAGACAGGCCAATTCAGGTTGGAAGCCACTATCATTTTATTGAAGTAAATCCTTACTTGATCTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAACATAGCTGCTGGGAATGCCACACGCTTTGAGCCAGGGGAATGTAAAAGTGTTGTACTTGTCAGCATTGGAGGTAGCAAAATCATCAGAGGAGGTAATAACATTGCTGATGGTCGAGGTAATGATTCCAATTGCATTGCAGCCATGGAGACTGTGACCACGAGGGGATTTAGACATGTTGAAGAGGAAAATGCTAGGGAAGGTATTACTGGAGAAGATTATTCATTAACTACAGTCATACCTCGAGAGGAATATGCCAACAAGTATGGCCCTACAAGGGGTGACAAAATCCGTCTTGGTGATACCGACTTGTTTGCTGAAATTGAAAAAGATTTTGCTGTCTATGGTGATGAATGTGTTTTTGGAGGTGGCAAAGTCATAAGAGATGGAATGGGTCAATCATGTGGTTGTAAACCTGAGCATTCCTTGGATACTGTTATAACAAATGCTGTGATCATTGATTATACCGGAATTATCAAAGCAGATATCGGTATTAAAAATGGATCGATTTTCTCAATTGGAAAAGCAGGAAATCCAGACATTATGAATGATGTAACTAATATGATAATTGGGGCTAATACTGAAGTTATTGCTGGAGAGGGCTTGATTTTGACAGCTGGGGCTATAGACTGTCATGTTCATTTTATATGCCCCCAGTTAGTAAATGATGCCGTAACAAGTGGTATCACAACATTAGTGGGAGGAGGAACAGGACCCGCTGAGGGAACACGTGCTACAACTTGTACACCAGCCCCAAATCATATGAAAATGATGCTACAAGCGACAGATGACATGCCTCTAAACTTTGGTTTCACTGGAAAAGGGAATAGTGCCAAACCTGATGAACTGCATAAAATAATCAAGGCTGGAGCTATGGGACTGAAGCTGCATGAGGATTGGGGAACTACACCGGCTGCAATAGACAATTGTTTGTCTGTTGCAGAACAATATGATATCCAGGTTAACATACATACTGACACCTTAAATGAATCTGGTTTTGTCGAACATACGATTGCTGCATTTAAAGGAAGAACCATTCATGCTTATCACAGTGAAGGTGCAGGTGGTGGCCATGCTCCAGATATCATAAAAGTATGTGGTGTGAAGAATGTCCTGCCCTCTTCGACAAATCCCACCCGCCCTTATACGTGTAATACCATAGATGAGCATCATGATATGTTGATGGTCTGCCATCATCTTAATAACGATATTCCAGAAGATGTAGCTTTTGCAGATTCAAGAATAAGGGCTGAAACAATTGCTGCTGAAGATATTTTGCATGATATGGGGGCAATTAGCATTATATCTTCTGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATATGCAGAACTTGGCAAACTGCAGATAAGATGAAGTCACAAAGAGGACCACTGCAACCAGGTGAACAGAACGACAACGTTCGGATCAAACGTTATATTGCAAAGTACACTATAAACCCAGCCATAGCAAATGGTTTCTCGCAGTATGTTGGTTCAGTTGAGGTGGGAAAGTTAGCTGATCTTGTATTATGGAAGCCGTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGCGGTTGCATATTCTAACATGGGTGACCCAAATGCAAGCATTCCAACACCTGAACCGGTGTTTATGAGACCTATGTTCGGTGCATTTGGCAAGGCTGGTAGTGCACACTCCATTGCTTTTGTGAACAAGGTAGCTTTGGCCGATGGGGTAAAAGCTTCGTATGGGCTTAACAAGAGGGTGGAAGCTGTGGAAAATGTAAGGAAGCTCACCAAGCTAGACATGAAACTGAATGATGCTCTTCCACAAATCACTGTGGATCCCGAAACATACAAAGTTACAGCAGATGGAGAGGTTCTCACCTGCACAGCAGCCAAGACTGTTCCTCTTTCTAGAAATTACTTCCTCTTTTGA | 2511 | 0.4241 | MKLSPREIEKLDLHNAGYLAQKRLARGLRLNYVETVALIATQILEFVRDGDKTVAQLMSIGRELLGRKQVLPAVRHLVESVQVEATFRDGTKLVTIHDPIASENGNLELALFGSFLPVPSLDKFTENEEDHRIPGQIIFGGENLILNPGRRAISLRVVNKGDRPIQVGSHYHFIEVNPYLIFDRRKAYGMRLNIAAGNATRFEPGECKSVVLVSIGGSKIIRGGNNIADGRGNDSNCIAAMETVTTRGFRHVEEENAREGITGEDYSLTTVIPREEYANKYGPTRGDKIRLGDTDLFAEIEKDFAVYGDECVFGGGKVIRDGMGQSCGCKPEHSLDTVITNAVIIDYTGIIKADIGIKNGSIFSIGKAGNPDIMNDVTNMIIGANTEVIAGEGLILTAGAIDCHVHFICPQLVNDAVTSGITTLVGGGTGPAEGTRATTCTPAPNHMKMMLQATDDMPLNFGFTGKGNSAKPDELHKIIKAGAMGLKLHEDWGTTPAAIDNCLSVAEQYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHAYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTCNTIDEHHDMLMVCHHLNNDIPEDVAFADSRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVICRTWQTADKMKSQRGPLQPGEQNDNVRIKRYIAKYTINPAIANGFSQYVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAVAYSNMGDPNASIPTPEPVFMRPMFGAFGKAGSAHSIAFVNKVALADGVKASYGLNKRVEAVENVRKLTKLDMKLNDALPQITVDPETYKVTADGEVLTCTAAKTVPLSRNYFLF* | 837 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra2g1412 | 836 | ProSiteProfiles | Urease domain profile. | 399 | 836 | IPR017951 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | PIRSF | Urease | 1 | 836 | IPR008221 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | Pfam | Urease beta subunit | 134 | 230 | IPR002019 | GO:0035550|GO:0043419 | |
| Vra2g1412 | 836 | ProSitePatterns | Urease active site. | 587 | 603 | IPR017950 | GO:0009039 | |
| Vra2g1412 | 836 | CDD | Urease_beta | 133 | 230 | IPR002019 | GO:0035550|GO:0043419 | |
| Vra2g1412 | 836 | Gene3D | - | 399 | 836 | - | - | |
| Vra2g1412 | 836 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 694 | 746 | IPR011059 | GO:0016810 | |
| Vra2g1412 | 836 | Gene3D | Urease, beta subunit | 132 | 262 | IPR036461 | - | |
| Vra2g1412 | 836 | TIGRFAM | urease_gam: urease, gamma subunit | 1 | 102 | IPR002026 | GO:0016151|GO:0043419 | |
| Vra2g1412 | 836 | Pfam | Urease, gamma subunit | 1 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Vra2g1412 | 836 | Gene3D | - | 4 | 124 | IPR036463 | GO:0016151|GO:0043419 | |
| Vra2g1412 | 836 | SUPERFAMILY | Urease, gamma-subunit | 1 | 104 | IPR036463 | GO:0016151|GO:0043419 | |
| Vra2g1412 | 836 | SUPERFAMILY | Urease, beta-subunit | 133 | 261 | IPR036461 | - | |
| Vra2g1412 | 836 | CDD | Urease_alpha | 272 | 835 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | SUPERFAMILY | Metallo-dependent hydrolases | 399 | 836 | IPR032466 | - | |
| Vra2g1412 | 836 | ProSitePatterns | Urease nickel ligands signature. | 397 | 410 | IPR029754 | GO:0016151 | |
| Vra2g1412 | 836 | CDD | Urease_gamma | 4 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Vra2g1412 | 836 | Hamap | Urease subunit alpha [ureC]. | 270 | 836 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | PRINTS | Urea amidohydrolase (urease) protein signature | 565 | 582 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | PRINTS | Urea amidohydrolase (urease) protein signature | 604 | 620 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | PRINTS | Urea amidohydrolase (urease) protein signature | 670 | 685 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | PRINTS | Urea amidohydrolase (urease) protein signature | 696 | 709 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Vra2g1412 | 836 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 271 | 447 | IPR011059 | GO:0016810 | |
| Vra2g1412 | 836 | Pfam | Urease alpha-subunit, N-terminal domain | 272 | 389 | IPR011612 | - | |
| Vra2g1412 | 836 | Pfam | Amidohydrolase family | 395 | 721 | IPR006680 | GO:0016787 | |
| Vra2g1412 | 836 | PANTHER | UREASE | 1 | 836 | - | - | |
| Vra2g1412 | 836 | Gene3D | Urease, subunit C, domain 1 | 272 | 749 | IPR011059 | GO:0016810 | |
| Vra2g1412 | 836 | Pfam | Urease subunit beta-alpha linker domain | 233 | 265 | IPR040881 | - | |
| Vra2g1412 | 836 | TIGRFAM | urease_beta: urease, beta subunit | 133 | 231 | IPR002019 | GO:0035550|GO:0043419 | |
| Vra2g1412 | 836 | TIGRFAM | urease_alph: urease, alpha subunit | 272 | 836 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra2g1412 | K01427 | - | gmx:547672 | 1518.83 |