Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1405 ATGCCTGATCTTACTGTTGGAAAGAAGAGATTTATCCAGCCAAATACGTGTTTCGCCAATTTGACCGATCAAGATAAATCAACTCTTTCACAAAGTGATAATTGTTTCTTCTCCGAGGCACTGAGTGAAGATTATAGCCCAATTCTACCTGGGCTGCCTGATGATGTGGCGGAGTATTGTCTGGCACTTGTGCCTCGTTCCAATTTCCCTGCTATGGGGGGTGTCTGTAAGAGATGGAGATCGTTTATTCAAAGCAAAGCATTCACTACTGTGCGAAAATTGGCTGGAATGCTTGAAGAATGGCTCTATTTCTTAACAACAGACTGTGAAGAAAAGGAAAGTCATTGGGAGGTTATGGATTGTCTCGGTCGTAAATGCCGATCTCTTCCACCAATGCCGGGTCCAGAAAAAGCTGGATTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTCATGGCTGGTTATTCAGCTACTGAAGGAACTGCCTTTGCCTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAATAGCTGGAGCAGTTTGTCGAACATGAATGTGGCTCGTTATGACTTTGCTTGTGCTGAAGTGAATGGCCTGGTTTATGCTGTTGGGGGCAATGGGGAGAATGGAGACAGTTTGTCCAGTGCTGAGGTGTATGATCCAGATACTGACGAATGGACACTGATAGAGAGCCTTCGCCGTCCGAGATGGGGTTGTTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTCACCATTGGAAACTCCAAGTTTGTTGATATATACAACCCTGAGAGACACGCCTGGTGTGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTAGTTGGAAAAAAGTTGTTCTGCATAGAATGGAAGAACCAGCGGAAGCTGGCTATATTCAGTCCAGAGGACAATTCATGGGAAATGGTTCCAGTTCCATTGACAGGTAGCACAAGTGTTGGTTTTCGGTTTGGGATGCTGGATGGCAAGTTGCTGCTCTTCCCTCTGCTGGCAGAACATGCTCATCAAACATTATCGTATGATCCAAATGCAGCTCTGGGGTCAGAGTGGCGGACTTGTGACATAAGGCCATCTGGTTTGTGCTTGTATTGTGTAACAATCAAGGCATGA 1158 0.4551 MPDLTVGKKRFIQPNTCFANLTDQDKSTLSQSDNCFFSEALSEDYSPILPGLPDDVAEYCLALVPRSNFPAMGGVCKRWRSFIQSKAFTTVRKLAGMLEEWLYFLTTDCEEKESHWEVMDCLGRKCRSLPPMPGPEKAGFGVVVLNGKLLVMAGYSATEGTAFASAEVYQYDSCLNSWSSLSNMNVARYDFACAEVNGLVYAVGGNGENGDSLSSAEVYDPDTDEWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYNPERHAWCEIKNGCVMVTAHAVVGKKLFCIEWKNQRKLAIFSPEDNSWEMVPVPLTGSTSVGFRFGMLDGKLLLFPLLAEHAHQTLSYDPNAALGSEWRTCDIRPSGLCLYCVTIKA* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1405 385 SUPERFAMILY F-box domain 46 89 IPR036047 GO:0005515
Vra2g1405 385 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Vra2g1405 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Vra2g1405 385 SUPERFAMILY Kelch motif 99 343 IPR015915 GO:0005515
Vra2g1405 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Vra2g1405 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Vra2g1405 385 SMART kelc_smart 247 294 IPR006652 GO:0005515
Vra2g1405 385 SMART fbox_2 52 92 IPR001810 GO:0005515
Vra2g1405 385 PANTHER KELCH REPEAT F-BOX PROTEIN 1 385 - -
Vra2g1405 385 Pfam F-box domain 51 86 IPR001810 GO:0005515
Vra2g1405 385 Gene3D - 85 379 IPR015915 GO:0005515
Vra2g1405 385 Pfam Kelch motif 236 279 IPR011498 GO:0005515
Vra2g1405 385 PANTHER OS02G0202900 PROTEIN 1 385 IPR045887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1405 Vra-Chr2 22244816 22246406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1405 52 230 Miscellaneous Gene Families AT4G33900 28.718 3.61e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1405 - - gmx:100802912 721.079