Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1403 ATGTCATTGGCATCATCATTCTCGATGCTCCGGCACCGCGCGGTGGCTTCCGCCGCTCCTCTCCTCCTGCGCCGCTTCCGGTCACTCCCAATTTCCGGCCGGCAGCAGCAAAACCCTAACAAGCAAGCCGCCCCGAGCCGCAACCTTCTGAAGGCGAAAAAAACGTTGAAGGAGTTTTCCTCTCTTGCCCCTGTCCTCTCCCTGGAAGACAGCCCCCCGCTCACGGAATCACAGGCCATCGGCGTCGTGGCGGCGTCGCAGGCGAACTTCATGCGCGTCATCGTTCCCGAAAACGACCAGCCTCCTTCTTCTGGAAGCTTCCGCGGGGTGGAGCTTCTCTGCGTGGTGAGGGCGCTGTTAAAGAAGATTAAGCGCAGGGTCATGGTCGGGGACAAGGTTCTTGTCGGTTCCGTGGATTGGGTGGATCGCAGGGGATGGATTGAGAACGTCTTCCACCGATCTTCTGAGATTCTTGACCCTCCCGTTGCCAACGTCGACCACCTTCTCGTGTTGTTCTCGCTCGAACAACCCAGACCTGAACCGTTTACCCTCACGCGCTTTCTTGTCGAAGCTGAATCCACCGGAATCCCTCTCACGCTGGCACTCAACAAGACCGAGCTTGTGGATCAAGAGGTCATTAGTTCGTGGAAGGCCAGGCTGCGTAGCTGGGGCTATGAGCCGGTTTTTTGCAGCGTTGAATCTGGACATGGACTTGATCTTCTTGCATTCAAGTTGAGGGATCAAACGACAGTGATTGTGGGGCCTAGTGGAGTTGGGAAGTCTAGTTTGATAAATGCCCTTAGAAGCAATCCTTCTGATGTTGCGGAAGGGGAGAATTGGTTTGAGCCTATTTCTGGAAGCAAGTGGCTTGAGGATCAACGGGTTGGGGAGGTTTCCACGAGAAGTGGTAGAGGAAAGCATACTACTCGCCATGTCTCTTTGCTTCCAGTATCTGGAGGGGGCTTTCTTGCTGATACTCCTGGATTTAACCAACCTAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACCTTTCCTGAAATTAGGAAAATGCTCAGTGCGAAGGAGACCGAGAAATGCTCATTTAACAATTGCTTGCATCTGGGAGAACCTGGGTGCATTGTGAAGGGAGACTGGGAAAGATATTCATTCTATTTTCAACTTCTGGATGAAATCAGAATCAGGGAAGAGTTCCAACTTAGGACATTTGGAACTAAAAGAGAAGGGGACGTCAGGTTGAAAATGGGAGATATGGGTGTTCAGCAAGCGGAACCACGGTTGGAACCTAAAAAGCACAGGAGACAATCTAGGAAGAGGATTAACCAATCAATTTTAGACGACTTAGATGATGACGAAGACGACGACATTGATGAGGAAAATGATCCCATTTTAAGGGCGCTACGTAATGAAAACTCTTAG 1422 0.5091 MSLASSFSMLRHRAVASAAPLLLRRFRSLPISGRQQQNPNKQAAPSRNLLKAKKTLKEFSSLAPVLSLEDSPPLTESQAIGVVAASQANFMRVIVPENDQPPSSGSFRGVELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRGWIENVFHRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKTELVDQEVISSWKARLRSWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNPSDVAEGENWFEPISGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPVSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSAKETEKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDDLDDDEDDDIDEENDPILRALRNENS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1403 473 ProSiteProfiles EngC GTPase domain profile. 163 330 IPR010914 GO:0003924|GO:0005525
Vra2g1403 473 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 127 270 IPR004881 GO:0003924|GO:0005525
Vra2g1403 473 MobiDBLite consensus disorder prediction 447 461 - -
Vra2g1403 473 Gene3D - 152 334 IPR027417 -
Vra2g1403 473 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 69 455 IPR004881 GO:0003924|GO:0005525
Vra2g1403 473 Gene3D Probable gtpase engc; domain 3 336 398 - -
Vra2g1403 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 393 IPR027417 -
Vra2g1403 473 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 332 IPR030378 GO:0005525
Vra2g1403 473 MobiDBLite consensus disorder prediction 417 473 - -
Vra2g1403 473 CDD YjeQ_EngC 163 391 IPR004881 GO:0003924|GO:0005525
Vra2g1403 473 SUPERFAMILY Nucleic acid-binding proteins 79 153 IPR012340 -
Vra2g1403 473 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 79 397 IPR004881 GO:0003924|GO:0005525
Vra2g1403 473 Gene3D - 74 151 IPR012340 -
Vra2g1403 473 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 69 455 - -
Vra2g1403 473 Pfam RsgA GTPase 150 334 IPR010914 GO:0003924|GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1403 K06949 - gmx:100796145 841.262