LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1397	ATGCAAACTAAGAAAAAAACTTCTAGGCGAAATGCCAGTCAAGAACGTGGCAGTCCTAAGGTTTCAAGATCACAGAGGAAGGTCTCTGAAAATGGAAGAGCTGCTCAAAAGAAAGTGACAGACCTAATTACGTCATCTGCTAGAAAGAATAAATCTTTTAGCACTCTCGAGAATAAAGCTAGAGAGCCTGTTCCATCAACAGATTTGAATTATGAATACCAGTTTATGGACAGTGGGACTTCCAATCTTTGTCTGGAAAATGATGCAGTTGATGGTGTTTCACTGGATTTTATGGGTTGTAACAATGAAGCTGCGCATCTTGAGTCTGGAACTATATTTTCTCCTGGGTTTCACTTATCCAAAAATCCTGGAGGAAAAGTTGTTGATAGAGTTGATTTTATCAAAATTTTTCAGAACGAAGACCACAAGAGAATTTCTCCATGCCAAGAAATAAAATCACTACAGGAAGATACAGTAGATGGTCCTGGCAGTCAAGACTTTGACACTGCAATGGAAATAGACATGAACAATGCATCCAACTACTCTAATTCAGGGAGCTGTGGCAATCAGATGCATGCTTCAGGCACAGAAAAGGTGAATGGTTGCAATTCTGATTTTGATGGAAATGGTCTTTCCATGGAAGTTTCTGCCATATATCTTGCCATGAAAAACTCAAAGCTAGAATGTGTTGACGAGCATGGTCAGGATCCCATGTCCTCTGAAATATGCACAGAGGAGGATGAGTTCGAGGACTTTGATGATTTTGACCCATACTTATTCATAAAGACCTTACCGGACCTGTCATCAGTGGTTCCAACTTTTAGACGATTGTTGTTACCTAAGCAGACACGTAGTTGCCCTTCTACTACCCTTGTTCTGGATTTGGATGAAACTTTGGTGCATTCTACACTGGAACCATGTGAGGATGTTGACTTCACTTTTCCTATTAATTTCAATTGTGAGGAGCACATTGTCTATGTACGCTGCCGCCCTCATCTGAAAGATTTCCTTGAGAGAGTTTCTGGACTTTTCGAGATTATTATATTTACAGCCAGTCAAAGTATTTATGCTGAGCAACTTCTAAACGTTCTTGATCCAAAGCGGAAGATATTTCGCCACCGTGTATACCGTGAGTCCTGTGTTTATGTCGAGGGAAATTATCTCAAAGATTTAACAGTGCTGGGTCGTGATTTGGCACACGTTATAATAATTGACAATTCCCCACAGGCATTTGGATTCCAGGTGGATAATGGAATACCTATTGAGAGTTGGTTTGAAGATCGTTCAGATCGAGAATTGCTTTCATTACTGCCGTTTTTGGAGAGCTTGGTTGGTGTTGAAGATGTCCGGCCACTAATTGCAAAGAAATTCAACCTGCGGGGGAAAATTGCAGCAGCCGTGCATCCTCTAAACACAAATAGAAGAGATTTCTTATCAGAATGA	1443	0.4054	MQTKKKTSRRNASQERGSPKVSRSQRKVSENGRAAQKKVTDLITSSARKNKSFSTLENKAREPVPSTDLNYEYQFMDSGTSNLCLENDAVDGVSLDFMGCNNEAAHLESGTIFSPGFHLSKNPGGKVVDRVDFIKIFQNEDHKRISPCQEIKSLQEDTVDGPGSQDFDTAMEIDMNNASNYSNSGSCGNQMHASGTEKVNGCNSDFDGNGLSMEVSAIYLAMKNSKLECVDEHGQDPMSSEICTEEDEFEDFDDFDPYLFIKTLPDLSSVVPTFRRLLLPKQTRSCPSTTLVLDLDETLVHSTLEPCEDVDFTFPINFNCEEHIVYVRCRPHLKDFLERVSGLFEIIIFTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLAHVIIIDNSPQAFGFQVDNGIPIESWFEDRSDRELLSLLPFLESLVGVEDVRPLIAKKFNLRGKIAAAVHPLNTNRRDFLSE*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1397	480	SMART	forpap2	287	431	IPR004274	-
	Vra2g1397	480	MobiDBLite	consensus disorder prediction	38	60	-	-
	Vra2g1397	480	ProSiteProfiles	FCP1 homology domain profile.	284	443	IPR004274	-
	Vra2g1397	480	PANTHER	INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED	1	467	-	-
	Vra2g1397	480	CDD	HAD_FCP1-like	290	421	-	-
	Vra2g1397	480	Pfam	NLI interacting factor-like phosphatase	290	450	IPR004274	-
	Vra2g1397	480	Gene3D	-	274	458	IPR023214	-
	Vra2g1397	480	TIGRFAM	HIF-SF_euk: dullard-like phosphatase domain	289	452	IPR011948	GO:0016791
	Vra2g1397	480	MobiDBLite	consensus disorder prediction	1	60	-	-
	Vra2g1397	480	MobiDBLite	consensus disorder prediction	20	34	-	-
	Vra2g1397	480	PANTHER	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	1	467	-	-
	Vra2g1397	480	SUPERFAMILY	HAD-like	278	454	IPR036412	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1397	Vra-Chr2	22202268	22206592	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1397	K17616		K12778	gmx:100804307	828.165