Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1394 ATGTCTTCAGACATGCCGTTCCCTTCCAAAAGACAAAAAACATCGCCGGATAAAACCTCTGACTTCTTCGAATCTTTGCCGGACGATCTTCTCCTCTCTATCCTCTGCAAGCTCAGTGCCACAGCATCTTCACCCTCAGATTTTATCAATGTCTTAGTAACGTGCAAGAGACTAAACTCTCTAGGCCTTCACTCTCTCGTGTTATCAAAAGCATCCCACAAAACATTCTCAGTCAAACCCCAAAATTGGTGTGATTCTGTTCACCGTTTCCTCAAACACTGTGCCGATGCCGGAAACATCGAAGCCTCTTACACTCTCGGCATGATTCGGTTTTATTGTCTGCAAAACAGAGGGAGTGGCGCGTCGCTCATGGCGAAGGCGGCTATGAATTCTCACGCGCCGGCGCTGTATTCTCTTGCGGTGATACAGTTCAACGGAAGCGGCGGTACAAAAAACGACAAGGACCTTCGTGCCGGAGTGGCCCTCTGCGCACGCGCGGCTTTTCTCGGTCACATCGACGCGCTGCGAGAGCTGGGTCATTGTTTGCAAGACGGTTACGGCGTTAAGCAGAACGTAGCGGAAGGTCGACGTTTTTTGTTGCAAGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCCGGCTCGAGCAATAAGCGTCCATGGGTGATTCCGTGGAACCTCCCAGTACCGCACCCTCGACTCCGTTTTGGGACCGGGACGGGTTGTCCACTGTTGAGTGATTACGGTTGCAACGTGCCGGCGTCGGAGACTCATCCGGCGAGTAAGTTTTTGTCGGAGTGGTTTGAAATTCGGAGCGGGTCACTGGGTCCGGGTATGAGACTGTGTTCACATTCGGGTTGCGGACGACCCGAGACTAGGAGGCACGAGTTCCGGAGGTGTTCAGTTTGCGGCGTGGTGAATTATTGCTCGCGCGCGTGTCAGGCGCTTGATTGGAAATTCCGGCACAAGGCAGAATGTGCTCCCGTTGAGAGGTGGCTCAATGACGACGGGGAAGAAGTCGCCGGCGAGGACGGCGGCGGCGACGCCGTAATGATGGCAAATAGTTAG 1065 0.5418 MSSDMPFPSKRQKTSPDKTSDFFESLPDDLLLSILCKLSATASSPSDFINVLVTCKRLNSLGLHSLVLSKASHKTFSVKPQNWCDSVHRFLKHCADAGNIEASYTLGMIRFYCLQNRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVAEGRRFLLQANARELAAVLSGSSNKRPWVIPWNLPVPHPRLRFGTGTGCPLLSDYGCNVPASETHPASKFLSEWFEIRSGSLGPGMRLCSHSGCGRPETRRHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPVERWLNDDGEEVAGEDGGGDAVMMANS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1394 354 ProSiteProfiles Zinc finger MYND-type profile. 283 325 IPR002893 -
Vra2g1394 354 Gene3D Tetratricopeptide repeat domain 84 217 IPR011990 GO:0005515
Vra2g1394 354 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 9 354 - -
Vra2g1394 354 SUPERFAMILY F-box domain 10 81 IPR036047 GO:0005515
Vra2g1394 354 SUPERFAMILY HCP-like 89 203 - -
Vra2g1394 354 MobiDBLite consensus disorder prediction 1 20 - -
Vra2g1394 354 PANTHER MYND DOMAIN-CONTAINING 9 354 IPR044508 -
Vra2g1394 354 Pfam MYND finger 286 325 IPR002893 -
Vra2g1394 354 SUPERFAMILY HIT/MYND zinc finger-like 280 330 - -
Vra2g1394 354 Gene3D - 276 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1394 Vra-Chr2 22189059 22190551 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1394 - - gmx:100798136 608.216