Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1388 ATGTCTCGGGTTGACAACAGAAATTCCTCTGCCGCCAAGCGTGCTAGGACTGATGGTAGCCGTAGGGAAGATGATTGGACTTGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCAGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCGCAGCTCCTTATTTAGGCTCTAATGCTCCATCTTCTATATATCTTAGTGTCCCACCATATGGATCTTCTCTGTTCAATGGATCATCAGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTCTCTGCTGGAAGTCCTTATAGACCATTGCATTTATCTGGACCTGCACCCTACACCGGTGGGCCAGTGATGGGAAATGGTGGGATCTATGGGATGCCCCAACTGTTGGATCGCTATGGCCTGGGTGTGCCTATTGGACCTGGGACAATGGGTGCCAGACCTGGATTTTTTCATGATGACAAGTCTCAGAAAAAAGACACAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTCTCATTTAGAACTGTCTGCAACATGAGAAAGTGCAACACGCCCAAACCTGGATCCCAGGCCTCAAAGTCGGACAAAAATTCTAAGCAAAAGATGCCTGAAGGAAGCTGGAAGTGTGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCTGCTGAGTCTGATAAATCTCCTTCACCATCTGCTGATCAAAATGATCAGTGA 852 0.4589 MSRVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSAAPYLGSNAPSSIYLSVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPAPYTGGPVMGNGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFHDDKSQKKDTTRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESDKSPSPSADQNDQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1388 283 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g1388 283 SUPERFAMILY Ran binding protein zinc finger-like 184 223 IPR036443 -
Vra2g1388 283 SMART zf_4 24 50 IPR001876 -
Vra2g1388 283 SMART zf_4 193 219 IPR001876 -
Vra2g1388 283 SMART zf_4 239 265 IPR001876 -
Vra2g1388 283 Gene3D - 14 54 - -
Vra2g1388 283 Gene3D - 226 269 - -
Vra2g1388 283 Gene3D - 182 223 - -
Vra2g1388 283 MobiDBLite consensus disorder prediction 262 283 - -
Vra2g1388 283 SUPERFAMILY Ran binding protein zinc finger-like 231 268 IPR036443 -
Vra2g1388 283 MobiDBLite consensus disorder prediction 218 246 - -
Vra2g1388 283 PANTHER OS08G0521400 PROTEIN 5 274 - -
Vra2g1388 283 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Vra2g1388 283 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Vra2g1388 283 Pfam Zn-finger in Ran binding protein and others 192 221 IPR001876 -
Vra2g1388 283 Pfam Zn-finger in Ran binding protein and others 237 267 IPR001876 -
Vra2g1388 283 MobiDBLite consensus disorder prediction 9 25 - -
Vra2g1388 283 PANTHER ZINC FINGER PROTEIN 5 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1388 Vra-Chr2 22139012 22142866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1388 181 270 EF-hand Containing Proteins AT1G55040 31.111 1.32e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1388 - - gmx:100798624 599.742