Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1196 ATGGCGACCGCTGTTTCGTGCTCATGGCTTACCCTTCCCTCCCAAATGAAGAACATTTCTCTCACATCCTCTTCCCATCCCATTTGCAATTCCAGTTCTCTCAGTTTCTCCAAAAGCCTCTCTCTCCCTCTCTTCTCACAAGGTAATTGCTTGCCGCTGAGCACAGTGCAAAGACGCGCGTCTGTGGTTTGCGAGGCTGCCCCCAAGAAAAAGGTGGACTCCGCTGTGAAGAGAGCTCGCCAAGCCGAAAACCGCCGCATTTACAACAAAGCTCGTAAATCTGAGATTAAAACGCGTACCAAGAAGGTTTTGGAAGCTCTGGAAGTTCTGAAGAAGAAACAAGATGCAGTATCCGAAGAAATCTTCCCTATTGAGAAGTTGATTGGAGAGGCATACTCAACAATTGACAAAGCTGTGAGAGCAGGAACACTGCACAGGAACACTGGAGCAAATCGAAAGGCTCGACTTGCCCGTAGGAAGAAGGCGGTGGAGATCCACCATGGCTGGTATATCCCAGTTCCCGAAGCCACTGCATGA 537 0.4953 MATAVSCSWLTLPSQMKNISLTSSSHPICNSSSLSFSKSLSLPLFSQGNCLPLSTVQRRASVVCEAAPKKKVDSAVKRARQAENRRIYNKARKSEIKTRTKKVLEALEVLKKKQDAVSEEIFPIEKLIGEAYSTIDKAVRAGTLHRNTGANRKARLARRKKAVEIHHGWYIPVPEATA* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1196 178 Hamap 30S ribosomal protein S20 [rpsT]. 59 162 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra2g1196 178 PANTHER 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC 1 177 - -
Vra2g1196 178 SUPERFAMILY Ribosomal protein S20 73 174 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra2g1196 178 TIGRFAM S20: ribosomal protein bS20 71 158 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra2g1196 178 Pfam Ribosomal protein S20 73 159 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra2g1196 178 PANTHER 30S RIBOSOMAL PROTEIN S20 1 177 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra2g1196 178 Gene3D Ribosomal protein S20 72 178 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1196 K02968 - gmx:100786192 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1196 2 16206579 16209567 Vra2g1196 2 16206579 16209567 ECH