Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1190 ATGGCTGTCCAGGCTGCTTCCTTGGTTTCTGGTTACTTCTCTGTTGCCAAAGAGGGGAAGCCTGGCATGTCTCTGAGGAACACCACAATGTTTGGTCTTTCATTAGAAGATGCTCTCAAAGCGGACTTCAGCTCTCTCTCATTTTCATGCAAAAGGGAATTCCAGAAAAAGGTTTGCCCTTTAAGGGTCCAATCAGTGGCAACAACTCCAGGAGTCACAAAGGCTTCACCAGAAGGCAAGAAAACTTTGAGGAAAGGCAGTGTTATTATCACTGGGGCTTCCTCTGGATTGGGCTTGGCCACTGCTAAGGCATTGGCGGAGACAGGAAAGTGGCATGTGATCATGGCATGCAGGGATTTCCTCAAAGCTGAAAGGGCTGCAAAATCTTCTGGCATTTCTAAGGAAAACTACACTGTTATGCATTTGGACCTTGCCTCCCTTGATAGTGTTAGGCAATTTGTGGACAACTTCAGGCAATCAGGAAGGCCACTGGATGTGCTTGTTTGCAATGCTGCAGTTTACTTGCCAACTGCAAGTGAACCTACACACACTGCTGATGGCTTTGAACTAAGTGTTGGAACTAACCATTTGGGGCATTTCCTGCTTTCACGCCTGTTGCTTGAGGACTTGAACAAATCTGATTACCCTTCTAAGAGGTTGATCATTGTTGGCTCAATCACAGGAAACACCAACACCTTGGCTGGAAATGTGCCACCTAAGGCTAATCTTGGTGACTTGAGGGGACTAGCTGGAGGCTTGAATGGACTAAACACTTCAGCCATGATAGATGGAGGATCCTTTGATGGAGCCAAGGCGTACAAGGACAGCAAAGTCTGCAATATGCTTACCATGCAAGAATTTCACAGAAGATACCATGAAGAAACTGGAATCACATTTGCTTCCCTCTACCCGGGTTGCATTGCCACAACAGGCTTGTTCAGAGAACACATTCCCTTATTCAGACTTCTCTTCCCTCCATTCCAAAAGTTCATAACCAAGGGCTTTGTCTCCGAAGATGAATCGGGAAAGCGGCTTGCACAGGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTCTACTGGAGCTGGAACAAGGCCTCTGCTTCATTTGAAAATCAATTGTCACAAGAAGCCAGTGATGCAGATAAGGCTCGCAAGGTTTGGGAGATCAGTGAGAAACTTGTAGGTTTGGCTTAA 1197 0.4628 MAVQAASLVSGYFSVAKEGKPGMSLRNTTMFGLSLEDALKADFSSLSFSCKREFQKKVCPLRVQSVATTPGVTKASPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSSGISKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTASEPTHTADGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNTSAMIDGGSFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGFVSEDESGKRLAQVVSDPSLTKSGVYWSWNKASASFENQLSQEASDADKARKVWEISEKLVGLA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1190 398 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 84 398 IPR005979 GO:0016630
Vra2g1190 398 Pfam short chain dehydrogenase 88 230 IPR002347 -
Vra2g1190 398 Gene3D - 72 398 - -
Vra2g1190 398 PRINTS Glucose/ribitol dehydrogenase family signature 87 104 IPR002347 -
Vra2g1190 398 PRINTS Glucose/ribitol dehydrogenase family signature 162 173 IPR002347 -
Vra2g1190 398 PRINTS Glucose/ribitol dehydrogenase family signature 295 312 IPR002347 -
Vra2g1190 398 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 397 - -
Vra2g1190 398 PANTHER - 1 397 IPR005979 GO:0016630
Vra2g1190 398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 365 IPR036291 -
Vra2g1190 398 CDD LPOR_like_SDR_c_like 85 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1190 Vra-Chr2 16026625 16029180 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1190 K00218 - gmx:100804565 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1190 2 16026625 16029180 Vra2g1190 2 16026625 16029180 ECH