Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1173 ATGTACAACGGAGGCTTATCACTTCCAATTTCTGCCACTGGTGCAAAACCTCCCTTCACTCGACCCACTGCAAATTTTCATCCCTCCGTTTGGGGCGATCGTTTTCTTTCCTATGTTCCTTCTTCCGCTGAAAGTGATAGCCGTATTCAACAAGCTAAACTACTAAAAGAGCACGTGAGGAAGAGGCTTGTTTCATCTATTGATGATAACAATTTCTCTTTTAAATTGAACTTCATTGATGCAGTCCAACGTTTGGGTGTGTCTTACCATTTCGACCACGAAATTGACTCTGCTCTATGTCAAGTTTATGACATTTCAACAAAGGACAATAATATAATAGCTCACAAAAACGATGATCTTTACCACACGGCTCTAAACTTTCGGCTCCTTAGACAACATGGATACCGCATTTCTTCAAGTGTATTTTTCAAATTCGAAGACCAAACCGGAAAGTTTAAAGAATGTTTAGCCGATGATATTGAAGGAATGTTAAGTTTGTATGAAGCAGCCCAACTAAGATGTCGTGGAGAAGATGTACTTGAAGAAGCCCACAATTTCAGTCTGGAGCATTTAACTAAGTTTATAACCACACAACTAAGTTGTTCTCTTGTGGCACGAGTTCAGCATACATTAAGACAATCACTTCGCCGAGGTTTGCCTAGGTTGGAGACAACATACTTTGTGTCTTTCTACGAAAAATATCCATCTCATGACGAAAAATTGATAACATTTGCAAAATTAGATTTTAACAAGTTGCAGGAGCTACATTTGAAAGAACTCAACAATATAACCAAATGGTGGTATAAGGATTTAGATGTCTCATCCAATTTACCTTTTACACGAGATAGGATCGTAGAATGTTATTTTTGGGCATTGGGGGTGTACTTTGAACCACAACATTCTAGATGGATAACAGCAAAATTAGCAGCTCTAACTACCATCGTTGATGACATCTACGATGCTTATGGAACCATAGAAGAACTTGAGCTTTTCACCAATGCAATTGACAGGTGGGATATTCGTTGCTTGGTTGATCTCCCAAAATACATGCAATTATGTTATAAGGCAATTTTGGACGTATGTGAAGAAATTGACAAAGAGATGAGAAAGCAAGGAAAAGTATATTGCATTAAGTATGTCACGAAAGAGATAAAAAGACTAGTCCAGGCTCAGATGGTTGAGGCAAGATGGTGCCATTCCAACCACGTTCCAACAGTGGAGGAATACATGCAAGTAAGAACAATATCCAGTGGTTACCCTCTCTTGATTACCTCATCCTTCCTAGGCATGGAAGATACAACAGAGGAGATCCTTCTATGGGCAACGAATGAACCAGTGATTATTGTAGCTTCTACAGTTCTGCTTAGGATCAAGGATGACATTGTTGGAGATGAGTTTGAACAGGAGAGACAACATGTTGTTTCAAGCATTCAATGTTATATGAAAGAGTATAAAATCTCAAGGAAATGTGTCATTGAAGAACTACATAAGTTAGTTGAGAATGCTTGGAAGGACATAAACGATGCATGCTTAGCTCCTATTCAAGTACCAATAAAATTTCTTATGCGTGCAATCAACTTTGCACGTATGGTCGACGTGGTTTTCAAAGACGAAGATATCTTTACAAATGCTGAAGGGATAATGAAAGATCACATTGAAGCTTTATTAGTTAAAAAGATGTTTGTATAA 1689 0.3813 MYNGGLSLPISATGAKPPFTRPTANFHPSVWGDRFLSYVPSSAESDSRIQQAKLLKEHVRKRLVSSIDDNNFSFKLNFIDAVQRLGVSYHFDHEIDSALCQVYDISTKDNNIIAHKNDDLYHTALNFRLLRQHGYRISSSVFFKFEDQTGKFKECLADDIEGMLSLYEAAQLRCRGEDVLEEAHNFSLEHLTKFITTQLSCSLVARVQHTLRQSLRRGLPRLETTYFVSFYEKYPSHDEKLITFAKLDFNKLQELHLKELNNITKWWYKDLDVSSNLPFTRDRIVECYFWALGVYFEPQHSRWITAKLAALTTIVDDIYDAYGTIEELELFTNAIDRWDIRCLVDLPKYMQLCYKAILDVCEEIDKEMRKQGKVYCIKYVTKEIKRLVQAQMVEARWCHSNHVPTVEEYMQVRTISSGYPLLITSSFLGMEDTTEEILLWATNEPVIIVASTVLLRIKDDIVGDEFEQERQHVVSSIQCYMKEYKISRKCVIEELHKLVENAWKDINDACLAPIQVPIKFLMRAINFARMVDVVFKDEDIFTNAEGIMKDHIEALLVKKMFV* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1173 562 Gene3D Farnesyl Diphosphate Synthase 28 550 IPR008949 -
Vra2g1173 562 SUPERFAMILY Terpenoid synthases 237 557 IPR008949 -
Vra2g1173 562 PANTHER OS04G0344100 PROTEIN-RELATED 15 541 - -
Vra2g1173 562 Pfam Terpene synthase family, metal binding domain 243 505 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vra2g1173 562 PANTHER TERPENE SYNTHASE 2-RELATED 15 541 - -
Vra2g1173 562 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 27 236 IPR008930 -
Vra2g1173 562 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 560 IPR034741 -
Vra2g1173 562 CDD Terpene_cyclase_plant_C1 21 557 IPR044814 GO:0010333|GO:0016102
Vra2g1173 562 Gene3D - 70 237 IPR036965 GO:0010333|GO:0016829
Vra2g1173 562 SFLD Isoprenoid Synthase Type I 238 560 - -
Vra2g1173 562 Pfam Terpene synthase, N-terminal domain 31 211 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1173 Vra-Chr2 15548464 15552038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1173 K15803 - gmx:100802427 768.074