Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1137 ATGATTGAATTTAAGGGTGGATTTGAAGAATCACTGGTGACCCTTTTGTTGTTGTGTCTGTGGATAGCTGTTATTTTCATCTCTTTGGTTTTGGGGATGAGTAGAAATGATGACCAGAAACAACAGCACCTTCTTCACGGAGGTGTTGCTGCTGGTAGTGGCGGCAAAACCAACAGCAAGAACAACCGCAATGGCTTTATTCCCAGCACCTTTCGTACTTTCTCTGGTTACCTGAAGATTGTTTCATCAGGTGCTTCTACCGTCGCTCGGTCAGCTGCTGCCTCCTTTGCATCGTCGATTTTGGATAAGCATGGGGATACTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACCTTCGAGGGCCAGGGAGAAGTCATTCGGCAAGTACTTCTTCTAGGCTATTGGTCCGGCTTCCAGGTTTGGGATGTTGATGATTCAGATAATCTCTATGACCTTGTTTCCAAACACGATGGTCCTGTTTCTATTATGCGAATGGTACCTAGTCCAACTGTATCGAAGAGACTGGAGGACACGTTTGCAGACAAACGCCCATTGTTGGCAGTATGTGTGGATGATTCTTTGGTGGGGAGAGACAAAATACAAGAGGGGTTGGTTGGCACTTGCAACGTGGGCACTTTAAGCCACCATGACCAAGTGAATGGAAACTATCTGCCATCAACTGTTCAATTTTATTCTATGAGATCCCAATCATATGTTCATACACTAAACTTTAGATCAGTTGTTTATTCTATAAGATGTAGTTCTCGAGTAGTTGCTGTTTCTCTAGCCACTCAGATACACTGTTTTTCTCCCACAACTTTATTAAGGGAGTATATTTTACATACTAATCCTGTAGTCATGAGTTGTCCTGGTTCTGGAGGCATTGGATTTGGACCACTGGCAGTGGGTCCAAGATGGCTGGCCTATAGTGGAATCGCTACTGTAATAGCTTCTTCTGGGCGTGTCAGCCCACAGCATTTAACACCGTCTGCAAGCTTTCCTGGCTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAGTCTAGCAAGCATCTTGCCGCTGGGATTGTGAACCTTGGAGATATGGGGTATAAGAAACTTTCCAGTTACTGCTCAGAACTTCTCCCAGATAACAGTGGCTCAGTACAATCTGTGAATTCTAGCACAAAAGGAAATGGAATCATCCATGGCCATTCAACAGATGTGGAAAGTGTTGGGATGGTCATTGTAAGAGATATTGTCAGTAAAAATGTCATTGCTCAATTCCGGGCCCACAAGAGTCCCATTTCAGCTTTATGCTTTGATCCTAGTGGCACCATCTTAGTGACTGCTTCTGTTCAGGGGCATAACATTAATGTTTATAAGATAATGCCTGGATATGACAGAGTGTCAGCATCTGATGCTGGCTCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCATAACAAATGCAGTTATTCAAGATATCAGTTTTGGTGTTGATAGCAGGTGGATTATGATTAGTTCCTCAAGGGGAACTAGCCATCTGTTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTATCATGTGACAATAGTTTAACTGAAAAAGATGGTTTGAGTGTTATGCCTAATCAAGCAGTTCATTGGCCTTGTAATTCAGCTGTAAAAATTTGTAAACAGCAGAGCCTCTGTGCTGCTGGTCCTCCTATCACACTCTCTGTTGTTAGCAGAATTAGGAATGGATCAAATGGCTGGAGAGGCACTGTAACTGGTGCCGCTGCAGCTGCAGCTGCGACAACTAGGTTAAGTTCCATTTCTGGGGCAATTGCTTCTTCTTTCTATAACGTAGAAGGCAGAAGTACCTTGTGTGTTAATGGGAACTATTCCAAGGAAAAGTATCATCTGTTAGTCTTTACATCCACAGGTTCAATGGTACAATATGCTCTGCAGACAATTAACTGTCAAGATTCAGATGTTGTTTCTGGAGTAATTCCTGCACATGAGTCTGCCCCTATGACTGATGCGAAAGTAGTTATTGAGCCTATCAAGAAGTGGAATATAAGTTGTAGACATAGTTGGAGAGAGGGGGTAGAAAATATAGACATTTATGGAGAGAATGGAGTTTCAGACATCAATAAAGTATGTTCTGATGAAGTAAAGGATAGTATCATCAGCCCTAAAATGAAGAATGTATGCATGAAATCGAATCCACGTTCTGAGAAAGAACATCATTTGTATATTTCAGAAGCTGAACTGCAAATGCATGAAGCAAAGACTCAATTGTGGGCAAAGACTGAGATATATTTTCATTCACTGGCTAAAGAGGTTGCTTTGGTGATGGATGAAGAAGCTGCTTCTGGAGGGGAGTTTGAGATTGAAAAGATCCCGACTCGTGTGATAGAAGCTAGGTCGAAAGACTTGGTTCCGATTTTTGACTTTATTCAGACTTCAAAATTTCAACATACAAGGACTCCTGCTGTGGATAACAAGTTAAATGAACAATTTTTTCATCAAAATTCCAAGTTGTTTGAAAAGGGAAGGATTTCACCCAGTAGTAGATTTCCTGGTTGTATGCCTAATTCTGGTGGATTTGCTGAATTGAAAAGTGGCGTTGAAGGAAATGAGTGGGATTATGGTTTGATTCCAGCAGAAGCAGAGGGTCTTGTAAATAACAATAACACCCTTAAATCAGATACTAGTCCAGAGACTGTAAATAATAGAAAGGAGCACATAAACATGGATGTTCATCACATGTTTGTAAATAGTGACAGAAAGGTCTGA 2778 0.4179 MIEFKGGFEESLVTLLLLCLWIAVIFISLVLGMSRNDDQKQQHLLHGGVAAGSGGKTNSKNNRNGFIPSTFRTFSGYLKIVSSGASTVARSAAASFASSILDKHGDTDRDRVIWAGFDTFEGQGEVIRQVLLLGYWSGFQVWDVDDSDNLYDLVSKHDGPVSIMRMVPSPTVSKRLEDTFADKRPLLAVCVDDSLVGRDKIQEGLVGTCNVGTLSHHDQVNGNYLPSTVQFYSMRSQSYVHTLNFRSVVYSIRCSSRVVAVSLATQIHCFSPTTLLREYILHTNPVVMSCPGSGGIGFGPLAVGPRWLAYSGIATVIASSGRVSPQHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVNLGDMGYKKLSSYCSELLPDNSGSVQSVNSSTKGNGIIHGHSTDVESVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGTILVTASVQGHNINVYKIMPGYDRVSASDAGSSYVHLYRLQRGITNAVIQDISFGVDSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKDGLSVMPNQAVHWPCNSAVKICKQQSLCAAGPPITLSVVSRIRNGSNGWRGTVTGAAAAAAATTRLSSISGAIASSFYNVEGRSTLCVNGNYSKEKYHLLVFTSTGSMVQYALQTINCQDSDVVSGVIPAHESAPMTDAKVVIEPIKKWNISCRHSWREGVENIDIYGENGVSDINKVCSDEVKDSIISPKMKNVCMKSNPRSEKEHHLYISEAELQMHEAKTQLWAKTEIYFHSLAKEVALVMDEEAASGGEFEIEKIPTRVIEARSKDLVPIFDFIQTSKFQHTRTPAVDNKLNEQFFHQNSKLFEKGRISPSSRFPGCMPNSGGFAELKSGVEGNEWDYGLIPAEAEGLVNNNNTLKSDTSPETVNNRKEHINMDVHHMFVNSDRKV* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1137 925 Gene3D - 119 516 IPR015943 GO:0005515
Vra2g1137 925 SUPERFAMILY WD40 repeat-like 130 520 IPR036322 GO:0005515
Vra2g1137 925 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 45 910 IPR045142 GO:0006914
Vra2g1137 925 Pfam Breast carcinoma amplified sequence 3 566 808 IPR022175 -
Vra2g1137 925 SMART WD40_4 418 458 IPR001680 GO:0005515
Vra2g1137 925 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 45 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1137 Vra-Chr2 14614931 14620759 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1137 - - var:108340445 1745.33