Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1134 ATGCGCGCCCCCGCCGGAAGAAACCTATGCACTCTCGCCGAAATCGTTCGCTCTCGGTTAATCCGCAAACCCAACACCAGTGTTGAATCCTTTATAGCACCTTCTCCTGAATTCGAAGTCGGTTTTGGTTCTGAACTGAAACATTCCTTTGAACACGACCTCGCTGGGGATTTGGTCGGCAAAGATGAGAGTACTAGGCAGATATCTGCTTTACTGTGCTCTAAACAGGACAAAGGGTCTGGTTACAAGGAAGTCGACCAGGAAGAAAAAAGGAAAAGTGCGTTAGATATACCATGGATGGCAGACCTGTCTCATAGTAATTTATCGGTTAAACGAAAGGAGGTAATGCGTGAGCGGAAGCATAAGTGGATTTTTAAATACTCTTGTAATGACCGTTTCAACAGGTTAATTAAATTGTGTGCACATAGGCTAGGAGCAACAAAAACAGTTAATGTGTTTAGTCACTTGGGTCGAAAGACAGGCGTAAAGGAGTACAATGCATTGATAAAAGTGTGCATAGAGAAGGCTAGGGCGACTGATGATGAATACATAGCTGTAAATGAGATGAGTAAGGCTTTTCACCTTTTCAAATCAATGAGGGATTTTGGATGTCCGCTGGAAGAGCAAACATATGGTCCACTTCTCTGTTATCTAATTGATATGGGTCTGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGCTGAGAATCCTCGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGTTGTGGTTAAGAGTTGACAATGAAGAAATGATCCGGGACATTTGCGAGTTTATTATAGTTGATGATAGAGATTCAGACTTACGAGCAAGTTACTTGATGGCTCTTTGTGAAAGTGATAAGACAATGCAACTTTTGGATGTGGTGAAGAATGTAGACATCATCAAGCTTTTATCTGCAGAATGTATTGTAAATATATTCCGATCATTAGGCAGGCTCCAACAGCAATCTGTTGCAGATGACATACTTTTGGACTTGAGAACACGTGATTACGATGAAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATTCCTAATTTAGCGGTTGAGGACATCATGGCAAAAGTCAATAATTTGCATGAATTACTAGAAGTCTTGCTTTCATCGTCATCATATGAAAAGCTTATTTTGCATTGCTGTGGTTTAGACCAGGTGGGCGATGCTCTAGATATTGTTGAACAAATGTGTGATGCTGGCTTTAACTTGTCAACTGACGTGTTACAATTCATATTACAAATCTGCGAGGAATCTTTTGAATATATTTGGGTACATCGAATCCATTCAATAATATGTCGCTATCATTTGGAGTTGAATGGTGAAATATGCAGGTGCTTGGTACACTTTTGTGTGAGGATAAAAGATTTTGAAGGCGCATACAAAATAATTTGTGACTTAGAGGAAATGAATGTTAAACTTACGGCAAACATGTTCAATGCTATAATGGCAGGATATTTTCGAGAGAAGAATATCAATGCTGGGTTAAGGGTCCTGAAACACATGCAAGGTGCCAATGTAGACCCTGATTCTCAGACTTTCAGCTATTTGATTAACAATTGTGAAACGGAAGAGGATATAGTGAAGTATTGTGATGAAATGAAGCAATCTGGAATTCAACCTACAAAGCAAGTTTTTATGGCCCTTGTTCATTCATACGCAGCTTGTGGAAATTTGGAGAAGGCAAAACAGGTAGTTTTGGATCCACACATACCAGGCAAGAGCTTAAATGAAATCAAGAGTGTACTTGTCGGAAATCTTGTATCACATGGGCAATTGTCCGAGGCTCTCCTTGTCTATGAACAGATTAAGAAAGATGGACATAAGTTGGAGCCAAAAGCAATTAAATGTCTAATTGAAGAGTTGACTCAACACAATGGGGAGTTGGATGCATTGCTACTTCTACTCAACGAAATGAGTGATCTAGACTATTGGGTTGATGGCTGCTTCAAGGTCATCTTGTACTGTGCACGGAACAATGATTTGAGTTCTGCTATGCTTTTGCTCAAACAACTCAAGGATAAGTTTGAAAATGATGAAATGGTACTGGAAGCCCTTTTTGACGGAGTATTTTCTGCAATTGCAGCATCGGAGGCCACTCATTTACAGATTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAACTGGGCCTTAGGCCGTCACGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAACAATGCTCGCTTGATTTGGAGGGAGTACGAGATTGCTGGGTTTCCTTACAATGTATTAAGTTACTTGCGAATGTATCAAACACTTTTGGCAGCTGGAGATGGTAGATCTGCATCCTTTATCCTTAAGAAAATTCCACGAGACGATGCAGAGGTTTGTGCTGTCATCATGGCATGTGAGGAAACATATAGTGCTCTTAATTCTGTAGGAGAGAAGAAAGAGCAACTAAAACGTAAAGGAAGAAAGAGCAAAAGAAAGAAGACCTGA 2514 0.4006 MRAPAGRNLCTLAEIVRSRLIRKPNTSVESFIAPSPEFEVGFGSELKHSFEHDLAGDLVGKDESTRQISALLCSKQDKGSGYKEVDQEEKRKSALDIPWMADLSHSNLSVKRKEVMRERKHKWIFKYSCNDRFNRLIKLCAHRLGATKTVNVFSHLGRKTGVKEYNALIKVCIEKARATDDEYIAVNEMSKAFHLFKSMRDFGCPLEEQTYGPLLCYLIDMGLVQEFQLFSDVIKAENPRSASRLGYYEMLLWLRVDNEEMIRDICEFIIVDDRDSDLRASYLMALCESDKTMQLLDVVKNVDIIKLLSAECIVNIFRSLGRLQQQSVADDILLDLRTRDYDEDNISNFIVSYAVSIPNLAVEDIMAKVNNLHELLEVLLSSSSYEKLILHCCGLDQVGDALDIVEQMCDAGFNLSTDVLQFILQICEESFEYIWVHRIHSIICRYHLELNGEICRCLVHFCVRIKDFEGAYKIICDLEEMNVKLTANMFNAIMAGYFREKNINAGLRVLKHMQGANVDPDSQTFSYLINNCETEEDIVKYCDEMKQSGIQPTKQVFMALVHSYAACGNLEKAKQVVLDPHIPGKSLNEIKSVLVGNLVSHGQLSEALLVYEQIKKDGHKLEPKAIKCLIEELTQHNGELDALLLLLNEMSDLDYWVDGCFKVILYCARNNDLSSAMLLLKQLKDKFENDEMVLEALFDGVFSAIAASEATHLQIGLDLLWAIKDELGLRPSRQCLDFLLSACANAGDLNNARLIWREYEIAGFPYNVLSYLRMYQTLLAAGDGRSASFILKKIPRDDAEVCAVIMACEETYSALNSVGEKKEQLKRKGRKSKRKKT* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1134 837 Pfam Pentacotripeptide-repeat region of PRORP 384 530 IPR033443 -
Vra2g1134 837 Gene3D Tetratricopeptide repeat domain 537 660 IPR011990 GO:0005515
Vra2g1134 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Vra2g1134 837 TIGRFAM PPR: pentatricopeptide repeat domain 489 521 IPR002885 -
Vra2g1134 837 Pfam PPR repeat 593 618 IPR002885 -
Vra2g1134 837 PANTHER OS02G0132600 PROTEIN 66 824 - -
Vra2g1134 837 Gene3D Tetratricopeptide repeat domain 661 837 IPR011990 GO:0005515
Vra2g1134 837 Gene3D Tetratricopeptide repeat domain 105 269 IPR011990 GO:0005515
Vra2g1134 837 Gene3D Tetratricopeptide repeat domain 382 536 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1134 339 650 Glycosyltransferase AT1G05670 19.817 1.92e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1134 - - gmx:100787964 1191.79