Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra2g1048 | ATGCATGGTCTCCTCAGAAGCCCAACATTGCTCAGGATTCCNGCCACAAATGGCATCATCAACCGTCGCTTTTTCCGATCAGAACAACAAAGATGTGCTGATCTCATTGATATATACGCTCGCGATCGAGCGTTGCATCTTGGCAAGAAGCTGCACGCGAGCTTAATCACCAAAGGTTTCTCTCGTTTCAACGTAATTGCTTCTAACCTCGTAACCTTCTACGTGTGCTGTAGCCAACTCTCCCACGCGCGAAAACTGTTCGACAAAATTCCCACAACAAATGTTCGCCGNTGGATTGCCCTCATTGGCACGTGTGCTCGCTGCGGCTTCTACGATCTCGCGCTGACGGTGTTCTCTGAGATGCAGGCCATTCCAGGGCTTACGCCAAACTANGTATTCGTCATCCCCAGCGTTCTCAAAGCTTGCGGCCACGTTGGGGATCCAATCACTGGAAAGAAGACGCATGGCTTGATTTTGAAGTGTTCCTTCGAACTTGATTCGTTTGTGTCCAGTGCATTGATAGTTATGTACTCCAAGTGTGTGAATATTGGGGACGCGCGCAAGGTGTTTGATGGGATGGTTATGAAAGACACNGTGGCTCTAAATGCCGTTGTTGCTGGGTATGTTCAACAGGGTNCTGCAAATGAGGCACTGAGTTTGGTGGAAAGTTTGAAGTTGATGGGTTTGAAGCCAAATGTGGTGACTTGGAACTCTTTGATATCTGGGTTTTCGCAGAAGGGTGACCTGGGAATGGTGTCTGAGATTTTTAGAGTAATGATTTCAGATGGGTTGGNGCCTGATGTGGTATCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGTAATAACGAGGCATTTGATGCGTTTAAGCAAATGTTGAGTCACGGGTTCTGCCCAACTTCAGCTACTATAAGCACCCTTTTGCCTGCTTGTGCTACTGTAGCAAGAGTTAGAATTGGTAGAGAGATTCANGGCTACGCTNTGGTGACTGGGGTGGAGGGAGATTTATATGTAAGGAGTGCTCTTGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCAAGGAATTTGTTTAGTAGGATGGCTGAGAAGAACACGGTTACTTGGAACTCCATCATTTTTGGTTTTGCGAATCATGGGTATTGCGTGGAAGCTATTGAGCTCTTCAATCAGATGGAGAAGGAAGGGGCTGCCAAGCTGGACCATTTAACTTTTACGGCAGCTCTCACTGCATGCAGTCATGTTGGAGACATTGAACTTGGGCAGAGGNTGTTCAAGGTCATGCAAGAAAAATACGGTATTGAGCCACGGCTNGAGCATTATGCGTGCATGGTGGATCTTCTTGGTCGAGCTGGGAAACTCGATGAAGCTTATTGCATGATAAAGGCTATGCCAATTGAACCTGATTTGTTTGTGTGGGGTGCAATACTGGCTGGCTGTAGAAATCACGGTCATGTGGAGCTTGCCGAAATCGCTTCTCTGCATCTGATGGAATTAGAGCCCGAGAGTGCTGNAAACCNTCTTCTGTTGNCTAGCCTATATGCTGATGCAGGCAAATGGGGAAAGGTTGAGAGGATCAAGAAAAGGATAAAGAAGGGAAAGCTCAGAAANCTTCAAGGCTTGAGTTGGATAAATAATTTATAA | 1653 | 0.4586 | MHGLLRSPTLLRIPATNGIINRRFFRSEQQRCADLIDIYARDRALHLGKKLHASLITKGFSRFNVIASNLVTFYVCCSQLSHARKLFDKIPTTNVRRWIALIGTCARCGFYDLALTVFSEMQAIPGLTPNXVFVIPSVLKACGHVGDPITGKKTHGLILKCSFELDSFVSSALIVMYSKCVNIGDARKVFDGMVMKDTVALNAVVAGYVQQGXANEALSLVESLKLMGLKPNVVTWNSLISGFSQKGDLGMVSEIFRVMISDGLXPDVVSWTSVISGFVQNFRNNEAFDAFKQMLSHGFCPTSATISTLLPACATVARVRIGREIXGYAXVTGVEGDLYVRSALVDMYAKCGFISEARNLFSRMAEKNTVTWNSIIFGFANHGYCVEAIELFNQMEKEGAAKLDHLTFTAALTACSHVGDIELGQRXFKVMQEKYGIEPRLEHYACMVDLLGRAGKLDEAYCMIKAMPIEPDLFVWGAILAGCRNHGHVELAEIASLHLMELEPESAXNXLLLXSLYADAGKWGKVERIKKRIKKGKLRXLQGLSWINNL* | 551 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra2g1048 | 550 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 26 | 195 | - | - | |
| Vra2g1048 | 550 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 196 | 244 | - | - | |
| Vra2g1048 | 550 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 244 | 548 | - | - | |
| Vra2g1048 | 550 | Gene3D | Tetratricopeptide repeat domain | 342 | 549 | IPR011990 | GO:0005515 | |
| Vra2g1048 | 550 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | IPR002885 | - | |
| Vra2g1048 | 550 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | IPR002885 | - | |
| Vra2g1048 | 550 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | IPR002885 | - | |
| Vra2g1048 | 550 | Pfam | PPR repeat | 98 | 122 | IPR002885 | - | |
| Vra2g1048 | 550 | Pfam | PPR repeat | 444 | 467 | IPR002885 | - | |
| Vra2g1048 | 550 | PANTHER | OS03G0271300 PROTEIN | 244 | 548 | - | - | |
| Vra2g1048 | 550 | PANTHER | OS03G0271300 PROTEIN | 196 | 244 | - | - | |
| Vra2g1048 | 550 | PANTHER | OS03G0271300 PROTEIN | 26 | 195 | - | - | |
| Vra2g1048 | 550 | Pfam | PPR repeat family | 196 | 243 | IPR002885 | - | |
| Vra2g1048 | 550 | Pfam | PPR repeat family | 367 | 416 | IPR002885 | - | |
| Vra2g1048 | 550 | Pfam | PPR repeat family | 266 | 314 | IPR002885 | - | |
| Vra2g1048 | 550 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 337 | 367 | IPR002885 | - | |
| Vra2g1048 | 550 | Gene3D | Tetratricopeptide repeat domain | 227 | 321 | IPR011990 | GO:0005515 | |
| Vra2g1048 | 550 | Gene3D | Tetratricopeptide repeat domain | 13 | 147 | IPR011990 | GO:0005515 | |
| Vra2g1048 | 550 | TIGRFAM | PPR: pentatricopeptide repeat domain | 234 | 268 | IPR002885 | - | |
| Vra2g1048 | 550 | TIGRFAM | PPR: pentatricopeptide repeat domain | 269 | 302 | IPR002885 | - | |
| Vra2g1048 | 550 | TIGRFAM | PPR: pentatricopeptide repeat domain | 370 | 399 | IPR002885 | - | |
| Vra2g1048 | 550 | TIGRFAM | PPR: pentatricopeptide repeat domain | 200 | 233 | IPR002885 | - | |
| Vra2g1048 | 550 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Vra2g1048 | 550 | Gene3D | Tetratricopeptide repeat domain | 149 | 226 | IPR011990 | GO:0005515 | |
| Vra2g1048 | 550 | Pfam | E motif | 486 | 548 | IPR046848 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra2g1048 | Vra-Chr2 | 11446041 | 11450128 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra2g1048 | 78 | 547 | Glycoside Hydrolase | AT3G49170 | 32.609 | 2.19e-80 | 267 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra2g1048 | - | - | gmx:100790576 | 910.212 |