Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1012 ATGTGGTCTATATCTATTGTATTGTACCATATCTATGAAACTTCTGCAAATATCAGAAGCCAGTTCAACTTTTTTAGTAGGGGACTAAGAACCTCTACACCACCCTTTCCCTTCTTTTTTCTCCCTCACTTCCTCATGACGCAGCACCAAACAACCTTAATGGAACCTCTTCTCACCCACAACCTCGCCAATGCCAAACCCAACTATGACTATGATGTCATAAACTGGTTTGAACATGTATCCCATAATGCTGCTTTTGTCCAGACTCAGTTGCTCACCCAGATTTTGAAGCAAAACTATGGAGTGGAATATCTCAACAAATGGCTGGGGAACTACAATATCCTTGAGATGGACGCATGTGCATTGGAATCCCTTTTCTCTTCTGTGGTTCCCCTTGCCTCACATGCTGATTTTGAGCCATTTATCCAAAGGATTGCTGATGACACAGCTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCCTAAGCTCTGGAACAACAGAGGGAAGGCAAAAGTTCGTACCCTTTACTCGCCATAGTGCACAAACCACGCTTCAAATATTCACCCTAGCAGCAGCCTATAGATCAAGGGTTTATCCAATAAGGGAAGGAGGAAGGATTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGTTTAACAGCAGGAACAGCCACAACACACTACTATGCAAGTGAAGAATTCAAAATCAAGCAGGATGCGACCAAATCCTTCACTTGCAGTCCCCAAGAAGTGATTTCTGGTGGAGACTACAAACAATCCACGTATTGCCACCTCCTTCTTGGCCTCTTCTACTCTGACCAAGTGGAATTTATCACCTCGGCTTTCATCTACAGCATGGTGCAAGCTTTCAGCAGTTTTGAAGAAAACTGGATAGAGATTTGCAATGACATCAGAGATGGCACTCTTAGTTCAAGAATCAAGTTACCAAAAATGAGAAAGGCTGTTTTGGACATCATCTTTCCAAGCCCAGATTTGGCTTCCAAGTTGGAAAGTGCTTGCCATGAGCTAGAACTGGTAGAGTGGTCTGGTTTAATTCCTAAACTGTGGCCAAATGCTAAGTATGTCTACTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAGCTTAGGCATTATGCAAATGGGTTACCTTTGGTTAGTGCTGATTATGGCTCAACGGAGAGCTGGATAGGGGTTAATGTTGATCCTAGTTTACCACCAGAAAATGTAACATTCGCTGTGGTTCCTACTTTCGCTTACTTTGAGTTCATACCACTTCACAGGAATGAAAAAAAACTTAGTTCAGGAGCTGATGATTTCACGGAAGATAAGCCAATTCCTCTCTCTCAGGTTAAAGTAGGACAAGAGTATGAAGTTGTCCTCACAACTTTCACCGGACTATACAGGTGCAGGTTAGGGGATGTGGTGGAAGTGGGAGGGTTCCACAATGGGAGCCCAAAGTTGAACTTTGTGTGTAGAAGAAAGCTAATATTGACAGTAAACATAGACAAGAACACAGAAAAGGACCTTCAAGTAGTGGTAGAAAGAGGGTCCCAGATTCTGACAAAGGGAAAAGCGGAGCTGGTTGATTTCACAAGCTATGCAGATGTGTCAAAGCAACCAGGACACTATGTAATATTTTGGGAGATAAAAGGGGAGGTAGAGGACAAGATCCTTAGTGCATGTTGCACTGAAATGGACAAATTGTTCATGGATCATGGGTATGTGGTGTCAAGAAAAACCAACTCGATAGGGCCCTTAGAACTCTGCATTTTGGAGACTGGGACTTTCAAGAAGATTTTGGACAACTTCATCGCAAATGGGGCAGCCTTGAGCCAATTCAAAACCCCCAGGTGCACCACCAATCGTGTCCTCCTCAAAATTCTCAACACGTGCACCACAAAAAGGTTTCAAAGCACTGCTTACAACAACACTTGA 1956 0.4305 MWSISIVLYHIYETSANIRSQFNFFSRGLRTSTPPFPFFFLPHFLMTQHQTTLMEPLLTHNLANAKPNYDYDVINWFEHVSHNAAFVQTQLLTQILKQNYGVEYLNKWLGNYNILEMDACALESLFSSVVPLASHADFEPFIQRIADDTAPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIREGGRILEFIYSSNRFKTKGGLTAGTATTHYYASEEFKIKQDATKSFTCSPQEVISGGDYKQSTYCHLLLGLFYSDQVEFITSAFIYSMVQAFSSFEENWIEICNDIRDGTLSSRIKLPKMRKAVLDIIFPSPDLASKLESACHELELVEWSGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPENVTFAVVPTFAYFEFIPLHRNEKKLSSGADDFTEDKPIPLSQVKVGQEYEVVLTTFTGLYRCRLGDVVEVGGFHNGSPKLNFVCRRKLILTVNIDKNTEKDLQVVVERGSQILTKGKAELVDFTSYADVSKQPGHYVIFWEIKGEVEDKILSACCTEMDKLFMDHGYVVSRKTNSIGPLELCILETGTFKKILDNFIANGAALSQFKTPRCTTNRVLLKILNTCTTKRFQSTAYNNT* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1012 651 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 68 649 IPR004993 -
Vra2g1012 651 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 68 649 - -
Vra2g1012 651 Pfam GH3 auxin-responsive promoter 76 629 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1012 Vra-Chr2 10721227 10724961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1012 72 646 EF-hand Containing Proteins AT1G23160 34.856 4.65e-115 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1012 K14487 - gmx:100792358 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1012 2 10721227 10724961 Vra2g1012 2 10721227 10724961 ECH
Vra2g1012 2 10721227 10724961 Vra2g1012 2 10721227 10724961 PCT