Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1008 ATGAGTCGCTACGATCCCAATCCCTTCGACCAAGAAGAGGTCGAGGTTAATCCCTTCGCGGATGGACAGGCTAAAGAAAAAGGGTCAAGTTATGGTGGAGGAGCATTTTATACCACTAATTCTGGAAGTGTTCCCTCTGCAAACTCAAAGCTCTCACCCCTTCCTCCAGAGCCTTATGATCGTGGGGCAAATATTGACATCCCCCTTGAAAACTCCAAGGACACCAAAGCAAAGGAGAAGGAACTTCAAGCTAGAGAAGCTGACTTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCCATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGGAAAGGAAATACCAATACATCTTCAAAGGACCCAATACATTGCATTTTCTACATGGTTGGGTTTGGTTCTGTGTCTTGTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCGATTATATATTGTATTTCTGGTGTTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACCGACAGTGCTCTGAAATTTGGCTGGTTTTTCTTACTTTACATGATTCACATTGCCTTCTGCATTCTCGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTGACGGGTATTTTGGCTGCGATTGACGTGTTGGGCGATAATGCATTGGTTGGGATATTCTACTTTATTGGGTTTGGATTTTTCTGTCTTGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATACATGTACTTCCGCGGCAGTGGCAAGACTGAAGTTTTGAAGCGTGATGCTGCGAGAGGGACAATGATGGCAGCTCTGTAA 912 0.4408 MSRYDPNPFDQEEVEVNPFADGQAKEKGSSYGGGAFYTTNSGSVPSANSKLSPLPPEPYDRGANIDIPLENSKDTKAKEKELQAREADLKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIGKEIPIHLQRTQYIAFSTWLGLVLCLVWNIVAVTTAWIKGEGPTIWFLAIIYCISGVPGSYVLWYRPLYRAMRTDSALKFGWFFLLYMIHIAFCILAAVAPPIIFKGKSLTGILAAIDVLGDNALVGIFYFIGFGFFCLESVLSIWVIQQVYMYFRGSGKTEVLKRDAARGTMMAAL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1008 303 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 303 - -
Vra2g1008 303 Coils Coil 72 102 - -
Vra2g1008 303 MobiDBLite consensus disorder prediction 1 73 - -
Vra2g1008 303 MobiDBLite consensus disorder prediction 33 50 - -
Vra2g1008 303 Pfam SCAMP family 112 283 IPR007273 GO:0015031|GO:0016021
Vra2g1008 303 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 303 IPR007273 GO:0015031|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1008 Vra-Chr2 10588331 10597001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1008 3 303 Miscellaneous Gene Families AT1G11180 66.558 1.43e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1008 K19995 - gmx:100796729 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1008 2 10588331 10597001 Vra2g1008 2 10588331 10597001 ECH
Vra2g1008 2 10588331 10597001 Vra2g1008 2 10588331 10597001 PCT