Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1007 ATGGCTTCCCAACACGAAAGCGGGTTGAGTGTCGACCCGATTCCTATTGGGGTCGAGACAACAATGGCTTCGCAACAGGAGAATCTGTTGGATATTGATCCGAATCCAGTTGGGGTGGAGACCCAGGAAGCGCAGACAGAAAATTTTGCGACTTTGGGTTCTGTTGTTCCTATTGAGGAAGGTGTGGAGAAGATCAATTTGTTGGATTCCTCTCATTCTTTTTCGATTGAGGAGAAGGGTGATAAGGATGACAGCGGAAGTGATAGTGATAGTGAAAGCGGTGATAAGGATGACAGCGGAAGTGATAGTGATAATGAAAGCGGAAGTGATAGTGATAGTGAAAGCGGAAGTGAGAGCGAAAGCGAAAGTGAGAATTCAGGGTCTGAAAGTTCTGATTCTGGTAGTGAAAGCAGTAGTACTAGTGATAGCGAAGAGGAGAGTGATGATGGCGACGATGATGATGAGAACGAGGTACAAGTTGAAGAAGGCGAGATTAGTTCTGATGAAGAAAAGGTAGCTAGTTGGAGCATGGTTGATGATGATGCCGATCGTGATGATGAAGATGGTGATGCTGGAGTTGGACCCATCAGGTCAAAGAACGAGCTTCAGAATCTGCCCGTTGTTCCTCCTGTCAATGCTGCTTTGGAACCACACCATCAAACGTTGCCAGTGGGAATCATTACTTCTATTCTTGGTGCTCAAGTCATTGTGGAAGGAGTGGAGAAGCATGACCCTCTTAATGAGGGTTCTATTCTTTGGTTGACTGAAAGTCGAAAGCCACTAGGTTTAATTGATGAAATCTTTGGACCAGTCAAGAACCCTTTTTATATTGTTAGATATAATTCTGAAAGTGAAGTTCCTGAAGGGATCAATGGGGGAACCTTGATCTCGTTTGTTCCAGAATTTGCTGAGCATGTGCTTAATAACAAGGATCTTTATAGGAAAGGGTACGATGCTTCGGGTGCAAATGATGAAGAGTTATCTGATGAAATGGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAAGAGAACGCAAAGAACTACAAAAAGAGGTGTAAATGATCAAAATCATGGTAAGAAAAAAAATAACAGAAAGAAATTTTCACCTAAAGAGCATGCAGCACCATCCATGCCTGATGCACCTGCTGCACCTTTGGTTAGTAATGGAAATTGTCCTCCTTTTCAAGGCATTGGACAAGCTCTGTTGGGTGGAACTGCCACAGTTTCATCATTTCCCTACTCAAACGCAGCGCCCCCCAACTTTGCTACTCATGGAATTTGGACACAAGGAACATTTCCACAGCAGCCACAGAATGCTATGTTTCCTAATGGTTTTCCTGCGAATGGGTTATCATGGTTGCCACAAAACACTCAAATTCCTCCACAGCTGCCAATGACAGGAATTTCATTTCAACAGCAAGTACATGGCAATCAGGGATCTCTTTCCTCAACTATGCTACCTGGGATGCAGCCCAATATGTTTGCTCAATCCATATATGCAGCAGGGCTTGTTGGTCAAAACCAAATGACATTTGGGATGGGATCACCCTTCCCACAGATTCAGCCACCTGTACAACAGGGATTTCCATCCAATTCTGGCGCGCCCCCTCAGTTTCATGCACGTCCATCTGGTAATCGTGGAAGAAAAAGATTTCATGGTGGAAGGAAAGGGTGGCGACCAACTAAGTGA 1692 0.4427 MASQHESGLSVDPIPIGVETTMASQQENLLDIDPNPVGVETQEAQTENFATLGSVVPIEEGVEKINLLDSSHSFSIEEKGDKDDSGSDSDSESGDKDDSGSDSDNESGSDSDSESGSESESESENSGSESSDSGSESSSTSDSEEESDDGDDDDENEVQVEEGEISSDEEKVASWSMVDDDADRDDEDGDAGVGPIRSKNELQNLPVVPPVNAALEPHHQTLPVGIITSILGAQVIVEGVEKHDPLNEGSILWLTESRKPLGLIDEIFGPVKNPFYIVRYNSESEVPEGINGGTLISFVPEFAEHVLNNKDLYRKGYDASGANDEELSDEMEFSDDEKEAEYKRTQRTTKRGVNDQNHGKKKNNRKKFSPKEHAAPSMPDAPAAPLVSNGNCPPFQGIGQALLGGTATVSSFPYSNAAPPNFATHGIWTQGTFPQQPQNAMFPNGFPANGLSWLPQNTQIPPQLPMTGISFQQQVHGNQGSLSSTMLPGMQPNMFAQSIYAAGLVGQNQMTFGMGSPFPQIQPPVQQGFPSNSGAPPQFHARPSGNRGRKRFHGGRKGWRPTK* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1007 563 MobiDBLite consensus disorder prediction 139 164 - -
Vra2g1007 563 Gene3D Probable tRNA pseudouridine synthase domain 193 299 IPR038664 -
Vra2g1007 563 MobiDBLite consensus disorder prediction 69 199 - -
Vra2g1007 563 MobiDBLite consensus disorder prediction 165 179 - -
Vra2g1007 563 MobiDBLite consensus disorder prediction 319 388 - -
Vra2g1007 563 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 47 554 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Vra2g1007 563 MobiDBLite consensus disorder prediction 519 563 - -
Vra2g1007 563 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 47 554 - -
Vra2g1007 563 MobiDBLite consensus disorder prediction 519 539 - -
Vra2g1007 563 Pfam Gar1/Naf1 RNA binding region 223 303 IPR007504 GO:0001522|GO:0042254
Vra2g1007 563 MobiDBLite consensus disorder prediction 337 359 - -
Vra2g1007 563 MobiDBLite consensus disorder prediction 104 119 - -
Vra2g1007 563 MobiDBLite consensus disorder prediction 74 103 - -
Vra2g1007 563 MobiDBLite consensus disorder prediction 544 563 - -
Vra2g1007 563 MobiDBLite consensus disorder prediction 120 138 - -
Vra2g1007 563 SUPERFAMILY Translation proteins 223 284 IPR009000 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1007 K14763 - gmx:102661630 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1007 2 10582431 10585131 Vra2g1007 2 10582431 10585131 ECH