Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1000 ATGAGGCGAAGGAGCGTAGATTTTCGAAGGCCAGGGAGGAGGAGGCTGCAGGATGTAGTGTGGTTGACATCGTGTATCGTTTTGCTTCTTTTCTTTATTTATATTCTCGCCAAAGGCTCCACCAAAATTGACTCCACTTACCAATTCTCAAGGAGAACTTTCAGGCGTGACAGGGTTATTGAAGGCTTCAATGTTACTGATGAGATGTTAAGCCCTGAGTCTGTGACCAGACAAATTAATGATCAAATCTCACTAGCAAAAGCTTTTGTTGTAATTGCCAAAGAAAGTAACAACCATCAATTTGCTTGGGAGTTAACATCTCAGATCCGCATTTCACAGATTTTTCTCTCGAATGCTGCCACGAGACGTACTCCATTAACAATCAAGGAATCAGAATATGCAATTCGTGATATGGCCTTATTGCTGTTTCAGGCCCAGCAGCTCCATTATGACAGTGCAAGCATGATCATGAGACTGAAAGGAAAAATTCAAGCTCTTGAAGAACAGATGAGTTCTGCAAGTGAGAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAGAGCCTATTTTGCCTTGGTGTCAGGTTGACATCTAAATGGTTCACGAATCTTAGCCTGCAGAAGAGTTTAAAGGACCAAAGACAAGTGGACATTAAACTGAAGGATAATGATCTTTACCACTTCTGTGTCTTTTCTGATAACATCCTTGCTACCTCGGTTGTGATCAATTCCACTTCGATAAATTCCAAAAACCCAGATAAGATTGTTTTTCACCTTGTCACAGATGAAATAAATTATGCTGCAATGAAGGCATGGTTTTCTTTGAACGATTTTCGACGGGTGACAGTTGAAGTTCAAAGGTTTGAAGACTTCAGCTGGTTGAATGCCTCATACGTTCCTGTGCTTAAGCAGCTACAAGACTCAGAGATACAGAACTATTATTTCAAAGGCAACAATGATGATAAGAAAACTCCCATCAAGTTCAGGAATCCGAAATATCTATCCATGCTTAACCACCTGAGGTTCTACATCCCTGAAGTTTTCCCCGAGCTGAAGAAAGTGGTGTTCCTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTACCATTGATTTGAACGGGAATGTAAACGGAGCCGTTGAGACATGCATGGAGACATTTCATAGATACCATAAATACTTGAACTACACACACCCTCTAATAAGAACACATTTTGACCCTGATGCTTGTGGGTGGGCATTTGGGATGAATGTGTTTGATTTGGTTCAATGGAGGAAAATGAATGTGACAGGAATCTACCACTATTGGCAAGAAAAGAATGCAGACAGGACATTGTGGAAACTTGGTACCTTGCCACCTGGGTTGTTAACCTTCTATGGGCTTACCGAGCCCTTGGATCCATCATGGCATGTGCTGGGTTTTGGCTATACAAATGTTGATCCTCAGTTGATAGAAAAAGGGGCTGTTATACACTTCAATGGAAACTCCAAACCCTGGTTGAAGATTGGGATGGAAAGATACAAGCCTATGTGGGAAAAGTACGTGGATTATTCTCACCCATTATTGCAACAGTGTAATTTTCATTGA 1605 0.4106 MRRRSVDFRRPGRRRLQDVVWLTSCIVLLLFFIYILAKGSTKIDSTYQFSRRTFRRDRVIEGFNVTDEMLSPESVTRQINDQISLAKAFVVIAKESNNHQFAWELTSQIRISQIFLSNAATRRTPLTIKESEYAIRDMALLLFQAQQLHYDSASMIMRLKGKIQALEEQMSSASEKSSKYGQIAAEEVPKSLFCLGVRLTSKWFTNLSLQKSLKDQRQVDIKLKDNDLYHFCVFSDNILATSVVINSTSINSKNPDKIVFHLVTDEINYAAMKAWFSLNDFRRVTVEVQRFEDFSWLNASYVPVLKQLQDSEIQNYYFKGNNDDKKTPIKFRNPKYLSMLNHLRFYIPEVFPELKKVVFLDDDVVVQKDLSDLFTIDLNGNVNGAVETCMETFHRYHKYLNYTHPLIRTHFDPDACGWAFGMNVFDLVQWRKMNVTGIYHYWQEKNADRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPQLIEKGAVIHFNGNSKPWLKIGMERYKPMWEKYVDYSHPLLQQCNFH* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1000 534 Coils Coil 156 176 - -
Vra2g1000 534 PANTHER GALACTURONOSYLTRANSFERASE 10-RELATED 3 534 - -
Vra2g1000 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 532 IPR029044 -
Vra2g1000 534 Pfam Glycosyl transferase family 8 236 508 IPR002495 GO:0016757
Vra2g1000 534 CDD GT8_like_1 229 522 - -
Vra2g1000 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 230 528 IPR029044 -
Vra2g1000 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 534 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1000 Vra-Chr2 10493928 10496690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1000 1 534 Glycosyltransferase AT2G20810 76.164 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1000 K13648 - gmx:100792018 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1000 2 10493928 10496690 Vra2g1000 2 10493928 10496690 ECH
Vra2g1000 2 10493928 10496690 Vra2g1000 2 10493928 10496690 PCT