Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0991 ATGGCCACTGTTACTTCTTCCTTCCATTTCTCCACTCTCACTCAATCTTCGCAGAGGAACTTCACCCTCTCTTCCAATTCACCAACCTTTCGCTTCCGCGTTGGTTTCTCATGCCACTATCTTGGAGTTCGAGCTTCCAGTTATGCTTCCAAAATGGTTGTTCGCTGCTCCTCTTCCTCTGTCACAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGAATATAAGCGACCAATTCCAAGTATCTACAACACGGTGCTGCAAGAGCTCATTGTTCAGCAACATTTAATGAGATACAAGAGATCATATCGCTATGACGCTGTATTTGCCCTTGGCTTTGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCGATCTTCCAAGCATACATTAAGGCACTGAAAGAAGATCCTGAACAATACAGAGTTGATGCAAAGAAATTGGAAGAATGGGCTCGAGCTCAAAACTCAACTTCACTAATTGAATTCTCATCCAGAGAAGGAGAAGTTGAGGGAATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTACAGTCGTTTCTTCGCAATAGGCCTCTTTCGCCTTCTTGAGTTAGCAAATGCTATGGAACCAACAATTTTGGAAAAGCTTTGTGCGGTTTTGAATGTCAACAAAAGAAGCGTGGATCGGGATTTGGATGTGTATCGTAACTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGTTGCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGACTAATGAGGCCATTACCCAACAATTTTCTAGCCTTTAG 867 0.4233 MATVTSSFHFSTLTQSSQRNFTLSSNSPTFRFRVGFSCHYLGVRASSYASKMVVRCSSSSVTDPPTVSETKLNFLKEYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIKALKEDPEQYRVDAKKLEEWARAQNSTSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKTNEAITQQFSSL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0991 288 Pfam Thylakoid formation protein 66 271 IPR017499 GO:0010207|GO:0015979
Vra2g0991 288 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 62 268 IPR017499 GO:0010207|GO:0015979
Vra2g0991 288 Hamap Protein Thf1 [thf1]. 61 269 IPR017499 GO:0010207|GO:0015979
Vra2g0991 288 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 282 - -
Vra2g0991 288 Coils Coil 243 273 - -
Vra2g0991 288 MobiDBLite consensus disorder prediction 265 288 - -
Vra2g0991 288 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 282 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0991 Vra-Chr2 10385607 10390872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0991 - - gmx:100779964 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0991 2 10385607 10390872 Vra2g0991 2 10385607 10390872 ECH
Vra2g0991 2 10385607 10390872 Vra2g0991 2 10385607 10390872 PCT