Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0973 ATGTTTAGATTTTCTTGTTTCCATGCTAATGTACACAGCAATAAAACAAAGAAAACAGTTCAACCTTCTACTGAAGTAATGTTGAAGACTTGTGAAGATGTTGCCCAAAATCAACGCCGTAAAGATTCATCTAATCCTCCAAGCGCATATTCACCCCTTCTGAAAGAACAAGCAGACCAGCAAATAGATGTGACTGGGATTCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGGTCAGAGGATATGAGTAGCAAATGTTCCTTTGAAAATGACAGTCAAGTTAACCAATCTAGGCCTCTTATAAAGAAGAGTCAGTCTCTTCAAAGTGTGCTTGATCAAGGCATAAGGGATGGTGATGAAGATATGGGGCTGTCGTGTGGTGATGCCAAAAGCCCAGTTGAGTCAAAGATGTCAACTTCCAAAAAGTATCATAATGGAAACCCTGTTGATCAGTATGGAAGTAATCCAAACGTTGAGTTTGCTGCCAGTTCAGGTTTTGCAAATGATGCCTCGCTTTTTTCAATTGGAGACCCAACACCTTCAGATAAAGACGCCCGTGAAATTTCTGACACTCCTTTATCTGGTGAATATGTTGGTGACATTCCTGACCAAACTTCTGTTCCTGGTAGTGTATCCCTACGGAAGTCACATTCTTCACCCAATATCAGAGCTTCTATACTTTCTGCTGAAAAAGATGCTTTTAGACGTGCATTATCAAGATCCTGTGATGATCTTCATGCTTTAAGCATGAGGCACAAAGAGGAATTCATCAACGACTTTAATGATCAAATAAGGGGAGATCAAGAAAGAGAGAATGACATGGGAAAAACTGAAGATGGTCATATGGACAACCTCTTTGATGATGGTTTCGATTCTTATCTGCTTACTGGTTCAGCAAAAGACTGGGTAATGCCATTGACATATGATACAAGTGATTCCAAAACCCTTCAAGGAGATTCCTCTGTTGAATTTCCTAACAAGGATTTCAAGATTAAACGCATTGAAGATTGGGTTATTGGTCTGCAGCATTGTGGACCACCCGTAGAGGAAACAAATGAAGAACTGCCTGAAGTTGTTAAGCCTTTAGCTGATGTTAACACAGTAAATGGTGTAACTGTTGCCATTGCAGATCATAAGGCCACTCCAGGAATGGATGCAGCTAAAAGATATATATCTTCTCTGGGGCCTAATGCCACTACCGCTCAGCTGGCTAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTCGTGAGTTTGAAAGTGCTCAATCTGTCTGGAAATGCTATCGTGAGGATAACTGCTGGTGCTCTTCCCCGTGGACTTCACGCACTGAATTTGTCTAGAAACAAGATCTCCACTATAGAAGGATTACGCGAACTTACAAGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCTCTGAAAGAGTTGTACCTCGCTGGAAACAAGATCAGCGAAGTGGAGGGTCTGCACCGTCTCTTAAAATTAAGCATCCTGGATCTCCGTTTTAACAAGATTTCAACAGCCAAATGTCTGGGCCAACTTGCAGCCAACTATAACTCTTTGCAAGCCATCAACTTGGATGGGAACCCTGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAGGGCCTTCTACCCCATCTCGTCTACTACAATCGGCAACCAATAAAAGTGAGCACTTTGAAGGATGGAGCAGAACGGTCGGTTCGGCTAGGAATGAATTCCCATCAGTTTGATCGCAGCCTTAGGTCGGATCGCAAGACCACAAGGAAGAGCAGCCAAGGTGGTGTTGGCTCACGGAGGTCAGTGGCCACTTCCACTCATGTTCGCAGAAACGTGGATTCACCAAAAGTATCCAGAGGCAAGCAAGCTCACCTGCCACCATCTAGAACCAAAGTACCAACCCACACTCGCCATCAGTTTGAAGCTCCCACCAAAGTATTGAACGTGACCTCAAATCTCTCCATGCGCAAGAGTCGCAGCGAGGGAAATTTTGGAGCTCTGTGA 2064 0.4351 MFRFSCFHANVHSNKTKKTVQPSTEVMLKTCEDVAQNQRRKDSSNPPSAYSPLLKEQADQQIDVTGIHISNWDSVERSCRSEDMSSKCSFENDSQVNQSRPLIKKSQSLQSVLDQGIRDGDEDMGLSCGDAKSPVESKMSTSKKYHNGNPVDQYGSNPNVEFAASSGFANDASLFSIGDPTPSDKDAREISDTPLSGEYVGDIPDQTSVPGSVSLRKSHSSPNIRASILSAEKDAFRRALSRSCDDLHALSMRHKEEFINDFNDQIRGDQERENDMGKTEDGHMDNLFDDGFDSYLLTGSAKDWVMPLTYDTSDSKTLQGDSSVEFPNKDFKIKRIEDWVIGLQHCGPPVEETNEELPEVVKPLADVNTVNGVTVAIADHKATPGMDAAKRYISSLGPNATTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPIKVSTLKDGAERSVRLGMNSHQFDRSLRSDRKTTRKSSQGGVGSRRSVATSTHVRRNVDSPKVSRGKQAHLPPSRTKVPTHTRHQFEAPTKVLNVTSNLSMRKSRSEGNFGAL* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0973 687 SMART LRR_typ_2 508 530 IPR003591 -
Vra2g0973 687 SMART LRR_typ_2 463 486 IPR003591 -
Vra2g0973 687 SMART LRR_typ_2 419 442 IPR003591 -
Vra2g0973 687 PANTHER NISCHARIN RELATED 75 686 - -
Vra2g0973 687 Pfam Leucine rich repeat 421 476 IPR001611 GO:0005515
Vra2g0973 687 Gene3D Ribonuclease Inhibitor 375 559 IPR032675 -
Vra2g0973 687 MobiDBLite consensus disorder prediction 86 108 - -
Vra2g0973 687 ProSiteProfiles Leucine-rich repeat profile. 443 464 IPR001611 GO:0005515
Vra2g0973 687 PANTHER BNAA09G01440D PROTEIN 75 686 - -
Vra2g0973 687 MobiDBLite consensus disorder prediction 591 687 - -
Vra2g0973 687 MobiDBLite consensus disorder prediction 610 631 - -
Vra2g0973 687 MobiDBLite consensus disorder prediction 178 219 - -
Vra2g0973 687 ProSiteProfiles Leucine-rich repeat profile. 488 509 IPR001611 GO:0005515
Vra2g0973 687 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Vra2g0973 687 SUPERFAMILY Outer arm dynein light chain 1 408 576 - -
Vra2g0973 687 SMART LRR_sd22_2 508 532 - -
Vra2g0973 687 SMART LRR_sd22_2 463 485 - -
Vra2g0973 687 SMART LRR_sd22_2 441 462 - -
Vra2g0973 687 SMART LRR_sd22_2 486 507 - -
Vra2g0973 687 MobiDBLite consensus disorder prediction 88 108 - -
Vra2g0973 687 MobiDBLite consensus disorder prediction 661 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0973 Vra-Chr2 10032010 10036125 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0973 - - gmx:100790061 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0973 2 10032010 10036125 Vra2g0973 2 10032010 10036125 ECH