Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0949 ATGAAAAACAGGATGCGCGTGACATTTACCTTGGCTACAGTAGCCATCGCAGCTACTATCATATCCATTTTTTTGTCCGCGCGAAGGCGCAAGAAGCACGACTCCTCTAGTTCGTGCTATTTGCATTCCGAACAGAAACCACAGAGTGCATTCAAGCGCGTATTATCGGACAATTCTTACACTCAGTTCAAGCATCTCAACAACGACGAGAATGCTTCGAATTCGCATCCGTTTGAGGCGGAGATTACAGCATTTTTGAAAACTCCTCCGCCCGAAATTGAATTTGGAACTGTAGACTTAGAAATGAAAGATTCGTATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGCGTTGAGTGAAGAGAGGTTTTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACAGTGGAGAAAGATTATTTGGTCGACACAATAGCCCTGCATGATTGTATGGGCATTCTTCGCCCTGTTTTCGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGTTACAGAGGGACTTCCACATATACGTTGTTAACCTCTTTGATACTTCAAAGGCATGTGAGCTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGATTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCCCGAACAGATGCACACTTTCTGTTGTATATTGCGAATTGTCTGATCAATGAACTCAAACAACTGGACAACGAAAACTCTAGTTCCAGTGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGATATGTTTACAACTTTTCACAAAGGACATTGAAGCATATCCTGGGGAATCTTCTGCATTATCATTATTTTCGCGTCAAGTGTGCAGTCATGGTTCTACGTCTATATCAAATGAAACCCAGAATATTGTGAGGCAACTATGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTCTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTTACTCTGAAATACACAAGATCATAGCCCAGGCTGACATCAATGTGGAAATGGGTGTGAACTCTTTCATCATTTCCTCATCTCCTGTTGTTTGCAGTCACCTCAGTGATATCTATCATATGCTTGCAAACAAGTTGGTTAATGATGATGATGATATTTATTCAGTGATTCTTCAGAAGTGTATAGGTGAAAATGGGAGTTGTCCGCTTTCAATATTTAATTATGCTTTGTTGATAAACAGTAATCTAAGACCTAATTTAGCCCATAAGCAACTGGGCCCAAAGAGTTCTAAACAATATTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCTTGTAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGACGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGATGACGATCCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAAGACGAAGACAATGACTTCTATATCCAGAGCAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTATTTACGATATCGAATCATCCCATCTTGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAGGTCGCACATGCCGCAGCAGAAAAGTACAAGAGAAAAATAGCTGCTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCAGGTCAAAAGACTAAAAAACAAATTGAAGAGAGTGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTTTACGCCATGGACCAAGAATGCCTCTCAATCGCCGAGAAGAACTGACTGAGATTATAAAGAGATATTATGGAGGAAGGGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACGCCTCATGAAAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTACAGGGAGTACTGCTACAGTGCCAGAACAGAATAATCATATTGGTTGCTCACCCAGAATGAGTAATGTGGATGACTTAAAAACTGATGTTCATGATGGCTCATATGAAAATGAAGTAGATACGGAGCTCTTTATGAGAAAAGATGATTTTAGAAACTCCACTTCAGCTTCTGATCTTACAGTTAACGGACCTGACTCTGCAGCTTTGAATGAAGATGAGATTACAGTTGCAACTGCAGATTGCAATGAAGGCGGTGACTCTGCTACTGTAAATGTTGATAACAGCTGTCGGAACAGAACACAAACAAATGGACTTGGTGACTTGTCTTGTTCTCCCAATGATGAAAAATCTATACATACCGAACATAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTGAGGGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAGAGATGGAGACAAGTATTTGTGGACGCTGTAAAACCACGTTTTCTTCCTGGTGGTTGGGATGTAAAACACAGTGGAAGAAGGGACTTCGGGGAGTTCAGTGTGTACAAACCTGACAAGAGAGCAGCTTCAGCCACTGCAGAGTAG 2778 0.4104 MKNRMRVTFTLATVAIAATIISIFLSARRRKKHDSSSSCYLHSEQKPQSAFKRVLSDNSYTQFKHLNNDENASNSHPFEAEITAFLKTPPPEIEFGTVDLEMKDSYVWVHTETQLKELVDALSEERFFAVDTEQHSLRSFLGFTALVQISTVEKDYLVDTIALHDCMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACELLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDNENSSSSDKFHFVLEASRRSNMICLQLFTKDIEAYPGESSALSLFSRQVCSHGSTSISNETQNIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSASYSEIHKIIAQADINVEMGVNSFIISSSPVVCSHLSDIYHMLANKLVNDDDDIYSVILQKCIGENGSCPLSIFNYALLINSNLRPNLAHKQLGPKSSKQYSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVDDDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAAEFGIPLYLRRVVHPGQKTKKQIEESGVSPLQLRTAAMALLRHGPRMPLNRREELTEIIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFSFKHSTGSTATVPEQNNHIGCSPRMSNVDDLKTDVHDGSYENEVDTELFMRKDDFRNSTSASDLTVNGPDSAALNEDEITVATADCNEGGDSATVNVDNSCRNRTQTNGLGDLSCSPNDEKSIHTEHNSKLSLLGHGPHGKQVVEHLLREYGEDGIREFCQRWRQVFVDAVKPRFLPGGWDVKHSGRRDFGEFSVYKPDKRAASATAE* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0949 925 PANTHER PROTEIN RRP6-LIKE 3 2 919 - -
Vra2g0949 925 Coils Coil 266 286 - -
Vra2g0949 925 SUPERFAMILY HRDC-like 332 391 IPR010997 GO:0000166|GO:0044237
Vra2g0949 925 ProSiteProfiles HRDC domain profile. 335 415 IPR002121 GO:0003676
Vra2g0949 925 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 919 IPR045092 GO:0000175|GO:0000467
Vra2g0949 925 SUPERFAMILY Ribonuclease H-like 46 276 IPR012337 -
Vra2g0949 925 Gene3D HRDC domain 326 430 IPR044876 -
Vra2g0949 925 Gene3D - 25 311 IPR036397 GO:0003676
Vra2g0949 925 MobiDBLite consensus disorder prediction 720 740 - -
Vra2g0949 925 SMART 35exoneu6 106 274 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vra2g0949 925 Pfam HRDC domain 340 386 IPR002121 GO:0003676
Vra2g0949 925 MobiDBLite consensus disorder prediction 720 742 - -
Vra2g0949 925 Pfam 3'-5' exonuclease 106 273 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0949 K12951 - gmx:100791485 1516.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0949 2 9610230 9617558 Vra2g0949 2 9610230 9617558 ECH