Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0908 ATGGGAAGTGTTTCACTAGTCTCCTCTGCAGTTGCCAGAAGATTAGAAGGGAAGGTGGCGTTGATCACAGGCGGAGCAAGTGGCATAGGGGAGACTACGGCGAAACTGATGGCGAAGCATGGAGCCAAAGTAGTCATCGCTGATATCCAAGACGAGTTAGGTCACTCAATTTCCAAGGAAATAGACTCCTCCATCTACGTCCACTGCGACGTCACAAAAGAGGAACACGTGGAACATGCAGTGAACACAGCCGTTTCTAGGTTCGGGAAACTAGACATCATGCACAACAATGCAGGGATCNNAGGAGTGTGGAACCCCAGCATTATGCACAACAAAATGTCCGATTTCCAGGAAGTGATTAACGTNAACTTGGTCGGCGTCTTCCTCGGAATGAAGCATGCGGCGAGGGTAATGGCCCCTTCTCGACGTGGCAGNATAATCGCCACNTCAAGCGTGTGTGGACGCTTAGGTGGCNTGGCTTCACACGCTTACACGTGCTCGAANCATGGCGTTGTGGGGCTGGTGCGAAACGCTGCAGTGGAGCTTGGACCCTTGGGAATACGNGTGAATTGTGTGTCTCCTTACGTAGTTCCAACGGCGATGAGTAAGACGTTTCTGAAGACTGACGATGAGGGGATTGCTGCACTTTATTCGAATCTGAAAGGTGTNACTCTGAAANCANAAGATGTGGCTGAAGCTGTGGTTTACTTGGCGAGTGATGAGTCCAAGTATGTTAGTGGTCATGACCTCCTTGTGGATGGAGGCTTCACTGTGCTGAATTCTGGTTTGTGTGCGTTTGAGTCACAAGTTTAG 813 0.4945 MGSVSLVSSAVARRLEGKVALITGGASGIGETTAKLMAKHGAKVVIADIQDELGHSISKEIDSSIYVHCDVTKEEHVEHAVNTAVSRFGKLDIMHNNAGIXGVWNPSIMHNKMSDFQEVINVNLVGVFLGMKHAARVMAPSRRGXIIATSSVCGRLGGXASHAYTCSXHGVVGLVRNAAVELGPLGIRVNCVSPYVVPTAMSKTFLKTDDEGIAALYSNLKGVTLKXXDVAEAVVYLASDESKYVSGHDLLVDGGFTVLNSGLCAFESQV* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0908 270 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Vra2g0908 270 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Vra2g0908 270 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Vra2g0908 270 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Vra2g0908 270 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Vra2g0908 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Vra2g0908 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 8 262 - -
Vra2g0908 270 Gene3D - 5 266 - -
Vra2g0908 270 Pfam Enoyl-(Acyl carrier protein) reductase 24 257 - -
Vra2g0908 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 258 IPR036291 -
Vra2g0908 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Vra2g0908 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Vra2g0908 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Vra2g0908 270 PANTHER MOMILACTONE A SYNTHASE 8 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0908 Vra-Chr2 8991142 8992323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0908 11 258 Acyl Lipid Metabolism Gene Families AT1G24360 31.496 2.54e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0908 - - gmx:100810754 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0908 2 8991142 8992323 Vra2g0908 2 8991142 8992323 ECH