Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0847 ATGAAGGTTCAGGAAACGAGGCCCCATGTCCATGCACCTGGGGAAGAAGAGAAGGTTATGACAAGGAAGCAGAAAGCTGAGTCCAAGGCACATGAAGTGGAGCATTCTCCTAAGAAGGCCAAGGTGGAAAATGAAGATGGCCACGTCAACGGAAAAACAGTACCTGATGTTGCAGAAGAATATGATGAGTTTTGCAAAGCTACAAGTGAGCACCTTCCTTTGGAGCAAATGAAAGAGATTCTGGAGGCCAATGGTCTTGATTCTTCTGGCACTGATCTTGAAATTACACGAAGATGCCAAGACTTGCTGTTTTATGGTCCATTGGACAAGTGCTCTGTTTGCAATGGGAGTTTGGAGTTTGATGGCAGACGTTATGTTTGCAGAGGGTTCTACAGTGAGTGGGCTAGTTGCATTTTCAGCACCAGAAACCCTCCAAGGAAACAGGAACCCATTAAGCTACCTGATTCTCTTCAGAACTCTGTGCCTTCAGATTTGCTAAAGAAGTATCAGGACCCAAGTCACAGGCCTCACAGGGATCTAGGCTTGGCTGAAAAACCATTTACCGGGATGATGATATCTCTGATGGGTCGTCTTGCTAGGACACATCATTATTGGAAAACAGTTATTGAAAAGCATGGAGGGAAAGTGGCAAACTCTATACTTGGGGCTACTTGTTTGGTAGCTTCACCCGCTGAGCGAGAACGTGGTGGCACATCTAAACTTGCAGAAGCCATGGAGCGAGGTATACCAGTGGTTAGGGAGGCTTGGCTGGTTGACAGCATTGAAAAGCAAGAACCACAGCCTTTGGAAGCTTATGATATTGTCTCTGATCTTTCTGTGGATGGCAAGGGAATTCCCTGGGACAAACAGGATCCTGGGGAGGAGGCTATTGAATCATTCTCAGCAGAACTCAAACTTTATGGGAAGAGAGGGGTCTACAAAGATACCAAGTTGCAGGAACAGGGGGGAAAGATATTTGAAAAAGATGGGATATTATACAACTGTGCCTTTTCCCTTTGCGACCAAGGACGCGGACTGAACGACTACTGTATCATGCAACTGATCGTTGTTCCAGAAAATCGTTTGCATATGTACTTTAAGAAAGGGAGAGTTGGCGATGATCCAAACGCAGAGGAGCGATTAGAAGAGAAGGACAACGAAGGCAGTTGTCTGAAAGAGTTTGCGAGACTCTTCGAGGAAATAACAGGAAATGAGTTTGAACCTTGGGAAAGAGAGAAAAAGTTCCAGAAGAAGCCATTGAAGTTCTATCCCATAGATATGGATGATGGAGTTGAAGTTAGACACGGAGCCCTAGGTCTTCGGCAGCTGGGGATAGCAGTAACACACTGTAAACTTGAGCCTTTGGTTGCAAATTTTATGAAAGTTTTGTGCAGCCAGGAGATATACAAGTATGCATTGATGGAGATGGGTTACGACTCTCCGGACCTTCCAATAGGAATGGTAACAAATCTTCATCTGAAAAGATGTGAAGACGTTCTCTTAGAATTCATAGGAAAGGTGAAATCATTGAAAGAAACTGGGCCCAAGGCTGAGGTTGTTTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCATTCCACAAGGCCTTTCAATTTTAGAGATTATCAAGAGATTGCAGACCATGCTGCAGCTGCCTTGGAGGGGGCGAGAGACATAACCCTCGCTTCTCACCTTATAGGAGACATGACTGGCTCAACCATCGACGACCCATTATCAGAGACATACAAGAAATTGGGTTGCTCAATTACTCCCCTGGACAAAAGTTCAGATGATTATCAGATGATTGTGAAATATCTTGAAAATACTTATGAGCCAGTTAAAGTTGGCGACATTGGGTACGGGGTGTCAGTGGAAAACATTTTTTCGGTGCAAACAGGTGGCTGCCCGTCCTATGAAGACATAGTTAAACTGCCAAATAAAGTTCTTTTATGGTGTGGAACACGAAGCTCAAACCTTTTGAGGCACTTGCACAAAGGATTCTTGGAAGCAATATGCTCACTACCAGTTCCGGGTTATATGTTTGGCAAAGCTATAGTCTGTTCCGATGCTGCAGCAGAGGCTGCACGGTATGGTTTTACTGCTGTTGACAGGCCAGAAGGGTTCCTGGTTTTGGCCATTGCTTCCCTAGGGAACGAGGTTACCGAGTTCAAAAGCCCACCCGAGGATACTTCGTCTTTGGAGGAAAAGAAGCTTGGAGTGAAGGGACTGGGGAAGAAGAAAACAGATGAATCAGAACACTTTGTTTGGAAAGATGATATAAAAGTTCCTTGCGGTAAACTAGTCGCCTCAGATCATCAAGATAGCCCCCTGGAATATAACGAGTATGCTGTCTACGATCCTAAGCAGGCACGCATAAGCTACTTGGTGGGAGTGAAATATGAAGAGAAAGGGGGTGAAGATTGA 2427 0.4495 MKVQETRPHVHAPGEEEKVMTRKQKAESKAHEVEHSPKKAKVENEDGHVNGKTVPDVAEEYDEFCKATSEHLPLEQMKEILEANGLDSSGTDLEITRRCQDLLFYGPLDKCSVCNGSLEFDGRRYVCRGFYSEWASCIFSTRNPPRKQEPIKLPDSLQNSVPSDLLKKYQDPSHRPHRDLGLAEKPFTGMMISLMGRLARTHHYWKTVIEKHGGKVANSILGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLVDSIEKQEPQPLEAYDIVSDLSVDGKGIPWDKQDPGEEAIESFSAELKLYGKRGVYKDTKLQEQGGKIFEKDGILYNCAFSLCDQGRGLNDYCIMQLIVVPENRLHMYFKKGRVGDDPNAEERLEEKDNEGSCLKEFARLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAVTHCKLEPLVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEDVLLEFIGKVKSLKETGPKAEVVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGARDITLASHLIGDMTGSTIDDPLSETYKKLGCSITPLDKSSDDYQMIVKYLENTYEPVKVGDIGYGVSVENIFSVQTGGCPSYEDIVKLPNKVLLWCGTRSSNLLRHLHKGFLEAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEVTEFKSPPEDTSSLEEKKLGVKGLGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDPKQARISYLVGVKYEEKGGED* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0847 808 Pfam WGR domain 333 412 IPR008893 -
Vra2g0847 808 ProSiteProfiles WGR domain profile. 322 422 IPR008893 -
Vra2g0847 808 Pfam Poly(ADP-ribose) polymerase, regulatory domain 450 583 IPR004102 GO:0003950
Vra2g0847 808 CDD parp_like 449 800 - -
Vra2g0847 808 Gene3D - 446 586 IPR036616 GO:0003950
Vra2g0847 808 Pfam PADR1 (NUC008) domain 97 147 IPR012982 -
Vra2g0847 808 SMART WGR_cls 333 416 IPR008893 -
Vra2g0847 808 Gene3D - 53 176 - -
Vra2g0847 808 ProSiteProfiles PARP alpha-helical domain profile. 449 568 IPR004102 GO:0003950
Vra2g0847 808 SMART BRCT_7 184 264 IPR001357 -
Vra2g0847 808 ProSiteProfiles BRCT domain profile. 182 274 IPR001357 -
Vra2g0847 808 SMART PADR1_2 95 148 IPR012982 -
Vra2g0847 808 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 449 585 IPR036616 GO:0003950
Vra2g0847 808 ProSiteProfiles PARP catalytic domain profile. 577 808 IPR012317 GO:0003950
Vra2g0847 808 Gene3D - 587 802 - -
Vra2g0847 808 SUPERFAMILY WGR domain-like 298 427 IPR036930 -
Vra2g0847 808 Pfam Poly(ADP-ribose) polymerase catalytic domain 597 800 IPR012317 GO:0003950
Vra2g0847 808 Gene3D BRCT domain 182 280 IPR036420 -
Vra2g0847 808 CDD WGR_PARP1_like 323 429 - -
Vra2g0847 808 MobiDBLite consensus disorder prediction 1 50 - -
Vra2g0847 808 CDD BRCT_PARP1 187 262 - -
Vra2g0847 808 SUPERFAMILY ADP-ribosylation 586 803 - -
Vra2g0847 808 PANTHER DNA LIGASE 1 801 - -
Vra2g0847 808 SUPERFAMILY BRCT domain 184 285 IPR036420 -
Vra2g0847 808 Pfam BRCA1 C Terminus (BRCT) domain 184 261 IPR001357 -
Vra2g0847 808 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0847 Vra-Chr2 7891159 7895735 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0847 K10798 - gmx:548024 1524.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0847 2 7891159 7895735 Vra2g0847 2 7891159 7895735 ECH