Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0838 ATGGAGTTTGGAAGTGCTCAGAACTTTCTAGAGGGCAAAGCCATTTTAGTCATGGGTGCAACGGTTCTGTCGAAGGATTTGTTCAGGGTGCTACGAGGAATGTGGGGAGCAGATTTTGTCTCCTTCATATCTGAGAAGGTGTTGGCTGTCGGTGGAGATGTTTCTGTTGAGAACTTGGGAGTCAAAGACACAAAGCTGAGGGAAAAGTTGTTGGAAGAGACAGACATCATAATAAATTCTGCTGCTACTACCAAGTTTTATGAGAGATTGGATGTTGCTATGGGGATTAATACGATGGGTGCTCTTAATGTTCTGAACTTTGCCAAGAACTGTAGTAAATTACAAATGCTTCTTCATGTATCGACAGCTTACGTATGCGCAATGGGGGAACAGATTTTGATGAACATGAAAGGTGATATACCATTGATCATTGCACGCCCCACCGTAATACTCAGCACTTACTCTGAACTATTTCCTGGTTGGATTGAAGGTGTCAGAACTTTGGACCTCTTTGTTGTGATGTACGGTAAAGGAAAGTTAACAAGAAGCATTGGTCGTCGGAGTACAATTATAGATGCGATACCTGCAGACATGGTGATAAACTCCATGATAGTAGCACTGGAGGCTTGTTCAAAGAGTTCTTCAAAGACATTGATTTATCATATTGGTTCTTCACTGAGAAATCCATTCAGAATTTCTGATCTTGAGGACTTGGCCCATCAATACTTTACAAAACATCCTTTGACAGACATGTATGGAAAACCAGTGGCTGTTCCCAAGAAAATTACGTGGATGTCTAGTGTGAGTTCATTTGACAGATACATCAACATTCGGTACATGCTAGCTCTCAAGGGATTGAACGTGATGAACAAAATGTGCTGCTACAGTCACGAGGCATTTCACAATGAAAGTAAACAGAAAGTGAAAAAGATGATGGGAATAATGAGACTTTATAAACCTTATGTCCTCTTTGATGGAATCTTCGATGACAAGAACGCAGAAAATTTAAGGATGACAAAAATGAAGGGAAAAGATGACGATGATGTTGGAAGATTTAACTTTGATCCCACAACCATTGATTGGACTCCTTATATGTTAAACACTCACATTCCTGGACTTGTGAAGTATGGTGTCAAGTAA 1140 0.4018 MEFGSAQNFLEGKAILVMGATVLSKDLFRVLRGMWGADFVSFISEKVLAVGGDVSVENLGVKDTKLREKLLEETDIIINSAATTKFYERLDVAMGINTMGALNVLNFAKNCSKLQMLLHVSTAYVCAMGEQILMNMKGDIPLIIARPTVILSTYSELFPGWIEGVRTLDLFVVMYGKGKLTRSIGRRSTIIDAIPADMVINSMIVALEACSKSSSKTLIYHIGSSLRNPFRISDLEDLAHQYFTKHPLTDMYGKPVAVPKKITWMSSVSSFDRYINIRYMLALKGLNVMNKMCCYSHEAFHNESKQKVKKMMGIMRLYKPYVLFDGIFDDKNAENLRMTKMKGKDDDDVGRFNFDPTTIDWTPYMLNTHIPGLVKYGVK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0838 379 Gene3D - 6 127 - -
Vra2g0838 379 Pfam Male sterility protein 127 203 IPR013120 -
Vra2g0838 379 Pfam Male sterility protein 33 126 IPR013120 -
Vra2g0838 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 256 IPR036291 -
Vra2g0838 379 Gene3D - 128 271 - -
Vra2g0838 379 PANTHER MALE STERILITY PROTEIN 2-RELATED 20 126 IPR026055 GO:0080019
Vra2g0838 379 PANTHER MALE STERILITY PROTEIN 2-RELATED 127 379 IPR026055 GO:0080019
Vra2g0838 379 CDD FAR_C 309 376 IPR033640 -
Vra2g0838 379 Pfam Male sterility protein 279 379 IPR033640 -
Vra2g0838 379 PANTHER FATTY ACYL-COA REDUCTASE 20 126 - -
Vra2g0838 379 PANTHER FATTY ACYL-COA REDUCTASE 127 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0838 Vra-Chr2 7769927 7773446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0838 127 376 Acyl Lipid Metabolism Gene Families AT4G33790 44.000 5.90e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0838 K13356 - gmx:100793736 367.466