Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0823 ATGCGCTCCAAGGACAGAATCGCATACTTCTATGACGGCGATGTTGGTAGTGTTTACTTTGGTGCAAAGCATCCAATGAAGCCACACCGGCTTTGCATGACTCATCATCTTGTTCTCTCATATGACCTTCATAAGAAAATGGAGATTTATCGTCCACATAAGGCTTATCCTGTTGAGCTTGCCCAGTTTCACTCGGCTGATTATGTTGAGTTTTTGCACAGGATTACGCCAGACACTCAGCACTTGTTCTTAAATGAACTGACGAAATATAATCTTGGAGAAGACTGCCCTGTATTTGACAACTTGTTTGAATTTTGTCAGATTTATGCTGGCGGAACTATAGATGCTGCACGTCGATTGAACAACCAACTTTGTGATATCGCTATAAACTGGGCTGGTGGACTTCACCATGCCAAGAAATGCGAGGCATCTGGGTTTTGTTACATCAATGACTTGGTTTTAGGAATCTTGGAGCTTCTTAAATATCATGCCCGTGTTTTGTATATTGATATAGATGTGCACCATGGTGATGGCGTAGAAGAAGCCTTCTACTTCACTGATAGGGTGATGACTGTCAGTTTTCATAAGTATGGAGACCTGTTCTTCCCGGGTACTGGTGATGCTAAGGAAATAGGAGAAAGAGAAGGAAAGTTTTATGCGATAAATGTCCCACTGAAGGATGGAATAGATGACCTTAGCTTCACACGACTTTTCAAGACTATTATTTCCAAAGTAGTTGAAACATATCAACCTGGTGCAATAGTTCTCCAGTGTGGAGCAGATTCGCTTGCTGGAGATCGCTTGGGTTGCTTCAATCTCTCTATTGATGGTCACTCCGAATGTGTTAGCTTTGTAAAAAGATTCAATTTGCCATTGCTGGTCACTGGAGGTGGAGGATACACAAAAGAAAATGTTGCTCGATGTTGGACTGTTGAAACAGGAGTTCTTCTAGATACAGAGCTTCCTAATGAGATTCCGGAAAATGATTATATTAAATATTTTGCACCAGAATTCTCTTTGAAGATTCCAAATGGGCAGATAGTCCCTCCTGACTTCTACATTCCAGATTTCGATGAAGATGAGCAGAACCCTGATGAGCGTATTGATCAGCACTCTCAAGACAAGCACATCCAGCGCGATGATGAATATTATGAAGCTGACAATGACAATGATCAAATGGATGTTTCATGA 1191 0.4139 MRSKDRIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFLNELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDLSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVSFVKRFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEFSLKIPNGQIVPPDFYIPDFDEDEQNPDERIDQHSQDKHIQRDDEYYEADNDNDQMDVS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0823 396 PANTHER HISTONE DEACETYLASE 3 392 - -
Vra2g0823 396 CDD HDAC_classI 10 316 - -
Vra2g0823 396 PIRSF HDAC_I_euk 1 352 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PIRSF HDAC_I_euk 343 396 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PANTHER HISTONE DEACETYLASE RPD3 3 392 - -
Vra2g0823 396 MobiDBLite consensus disorder prediction 356 396 - -
Vra2g0823 396 Pfam Histone deacetylase domain 24 313 IPR023801 -
Vra2g0823 396 Gene3D Histone deacetylase domain 1 381 IPR037138 -
Vra2g0823 396 SUPERFAMILY Arginase/deacetylase 6 342 IPR023696 -
Vra2g0823 396 MobiDBLite consensus disorder prediction 364 383 - -
Vra2g0823 396 PRINTS Histone deacetylase signature 26 43 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PRINTS Histone deacetylase signature 59 77 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PRINTS Histone deacetylase signature 90 107 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PRINTS Histone deacetylase signature 111 131 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PRINTS Histone deacetylase signature 152 168 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PRINTS Histone deacetylase signature 212 225 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PRINTS Histone deacetylase signature 229 247 IPR003084 GO:0004407|GO:0016575
Vra2g0823 396 PRINTS Histone deacetylase superfamily signature 133 156 IPR000286 -
Vra2g0823 396 PRINTS Histone deacetylase superfamily signature 165 180 IPR000286 -
Vra2g0823 396 PRINTS Histone deacetylase superfamily signature 251 261 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0823 Vra-Chr2 7528306 7534590 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0823 K06067 - gmx:100795845 791.956