Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0816 ATGCGTTTTCGTCTCCACCTCCTCCCTCTATCGAAGAAGCACGATCAGTTTCTGTTTCGACGTAACGCGGTTACCTTCTGTGACGGAGTTCAACAGCCCTCAGACGCCACCATAGCCAATCTGGTCCTCGAATCAGACCCACTCACTCTCTCCGAGACCCTATTCAAGCCCACAATCCAATGGGCGCCCGAGCTCGTGAACAAGGTCTTGAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTTCAATTTTTCAAACACCTGGACCGCCACCCTGCCTACATCCACTGCGCCTCGTCGTTCGACCACGCCATCGACATCGCGGCCCGCATGCACGACTACAACGCCGCATGGGCCTTAGTGGGCCGCATGCGATCTCTCCGCCGCGGCCCAACCCCCCGAACCTTCGCCATCCTCGCCGAGCGCTACGCCGCGAACGGAAAACCCCACCGCGCCGTCAGAACCTTCCTCACCATGCACGAGCACGGTTGCCGCCAGGACCTGAACTCATTCAATACCGTCCTCGACATCCTCTGCAAATCGAAGCGTGTGGAAATGGCGCACTCCTTACTCAAAACGTTACGGTCCAGATTCAAACTTGATTGCGTGAGCTACAACATAATCGCAAACGGTTATTGCTTAATCAAACGCACGCCGATGGCGTTGCAGGTTCTGAAGGAAATGGTGCAGCGAGGGATAAACCCTACGATGGTCACGTACAACACATTGCTGAAAGGGTATTTTCGGAGTAATCAAATTAAGGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGGAAGTGCAAGATTGATGTTGTGACTTACACGACTGTGATTCACGGGTTTGGGGTGGCGGGTGAGGTTAAGAAATCTCGTAGGGTTTTTGATGAGATGATGAAGGAGGGTGTGGCTCCTAGTGTCGCCACGTGTAATGCGTTGATTCAGGTTTTGTGTAAGAAGGATAGCGTGGAGAATGCGGTGGTGGTTTTTGAGGAGATGATGAGGAAGGGGTTGTGTGTGCCGAATGTGGTTACTTACAACGTTGTTATCAGAGGTTTTTGTCATGTTGGGGACATGGAAAGGGCATTAGGGTTTATGAGAAGAATGGGGGAACATGGTTTGAGGTGTTCTGTTCAGACTTATAATGTTGTGATTAGGTACTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGATGTTTGAGAAGATGAGGGATGAGCTTTGCTTGCCCAATTTGGATACTTACAATGTTCTGATCAGTGCCATGTTTTTGAGGAAGAAATCGGAGGATTTGGTGGTGGCTGGGAAATTGTTGATGGAGATGGTTGATAGAGGGTTCTTGCCACGGAAGTTTACTTTCAATAGGGTGTTGAATGGACTTGTTATTACTGGGAATCAGGATTTTGCGAAAGAGATTCTGAGAATGCAGAGCAGGTGTGGCCGTATTGTTCGGCGTTTGAAATTGTGA 1467 0.5024 MRFRLHLLPLSKKHDQFLFRRNAVTFCDGVQQPSDATIANLVLESDPLTLSETLFKPTIQWAPELVNKVLKRLWNHGPKALQFFKHLDRHPAYIHCASSFDHAIDIAARMHDYNAAWALVGRMRSLRRGPTPRTFAILAERYAANGKPHRAVRTFLTMHEHGCRQDLNSFNTVLDILCKSKRVEMAHSLLKTLRSRFKLDCVSYNIIANGYCLIKRTPMALQVLKEMVQRGINPTMVTYNTLLKGYFRSNQIKEAWEFYLEMKKRKCKIDVVTYTTVIHGFGVAGEVKKSRRVFDEMMKEGVAPSVATCNALIQVLCKKDSVENAVVVFEEMMRKGLCVPNVVTYNVVIRGFCHVGDMERALGFMRRMGEHGLRCSVQTYNVVIRYFCDAGEIEKGLEMFEKMRDELCLPNLDTYNVLISAMFLRKKSEDLVVAGKLLMEMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCGRIVRRLKL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0816 488 Pfam PPR repeat family 234 281 IPR002885 -
Vra2g0816 488 Pfam PPR repeat family 340 388 IPR002885 -
Vra2g0816 488 Pfam PPR repeat family 304 337 IPR002885 -
Vra2g0816 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Vra2g0816 488 Gene3D Tetratricopeptide repeat domain 368 485 IPR011990 GO:0005515
Vra2g0816 488 Gene3D Tetratricopeptide repeat domain 53 195 IPR011990 GO:0005515
Vra2g0816 488 Pfam PPR repeat 169 195 IPR002885 -
Vra2g0816 488 Pfam PPR repeat 202 232 IPR002885 -
Vra2g0816 488 Pfam PPR repeat 137 163 IPR002885 -
Vra2g0816 488 Gene3D Tetratricopeptide repeat domain 196 297 IPR011990 GO:0005515
Vra2g0816 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Vra2g0816 488 PANTHER OS02G0679200 PROTEIN 27 488 - -
Vra2g0816 488 Gene3D Tetratricopeptide repeat domain 298 367 IPR011990 GO:0005515
Vra2g0816 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Vra2g0816 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Vra2g0816 488 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 27 488 - -
Vra2g0816 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vra2g0816 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Vra2g0816 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Vra2g0816 488 TIGRFAM PPR: pentatricopeptide repeat domain 379 411 IPR002885 -
Vra2g0816 488 TIGRFAM PPR: pentatricopeptide repeat domain 169 195 IPR002885 -
Vra2g0816 488 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Vra2g0816 488 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Vra2g0816 488 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Vra2g0816 488 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Vra2g0816 488 TIGRFAM PPR: pentatricopeptide repeat domain 343 376 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0816 Vra-Chr2 7420265 7423063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0816 128 483 Glycosyltransferase AT1G05670 27.855 1.17e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0816 - - gmx:100808784 821.617