Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0812 ATGGTTGATTCAGAGCCAAAGTTCTTCATCCCGGAGTCAATCCAGGGCGTCAATTTCGACGTCACGGCACAGATGAGGATGGTCTGGGAGGTCATAAAGGCGCCGCTCATCGTGCCGCTGCTCAACTTGGCGGTGTACATTTGCCTCGCCATGGCCCTCATGCTCTTCATGGAGAGGGTTTACATGGGCATTGTCATCATCCTCGTCAAACTCTTCTGGAAGAAACCCCACCAACGCTACAAGTTCGAACCCCTCCAAGAAGACGAGGAACTCGGCAACACCAACTTCCCCGTCGTCCTTGTTCAGATTCCCATGTTCAACGAAAAAGAGGTGTACAAGGTGTCAATTGGAGCAGCCTGTAATCTCTCATGGCCCGCGGATCGTCTTGTGATTCAAGTGCTCGACGATTCAACTGACCCTGCCATCAAGCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGCAAAGGGATAAACATAACATACCAAATCAGAGAGACTCGAGGAGGATACAAAGCTGGTGCTCTAAAAGAAGGTCTAAAACGTAGCTATGTGAAACATTGCGAGTACGTGGCAATTTTTGATGCTGATTTTCGTCCAGAACCAGATTTTCTCAGACGTTCCATTCCTTTCTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGTGAATGCTGACGAGTGTTTGTTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACTGTAGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTTGGTTTCAACGGAACTGCTGGTATTTGGAGAATAGCTGCTATTAATGAAGCTGGAGGGTGGAAAGACAGAACAACAGTGGAAGATATGGATCTTGCTGTTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTCGGAGACCTCCAGGCAAAAAGTGAGCTTCCAAGTACTTTGAGAGCCTTTAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCAAATTTGTTCCGCAAAATGGTTATGGAGATAGTAAGGAACAAGAAAGTTAGATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTTCGAAAAATCATAGCTCACATGGTCACTTTCTTCTTCTACTGTGTTGTGATTCCTCTCACAATCTTGGTCCCTGAGGTTCACGTTCCCATATGGGGAGCTGTTTATATTCCTTCCGTCATAACCATTCTCAATTCAGTAGGAACACCAAGGTCTATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACAAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGAGCTAATGAATGGGTTGTGACTGAAAAACTTGGTGATTCTGTCAACAGCAATAACAAGAATAAATCAGGAGATGCTGCCAAGAAGAATGTTGCCACCAAGGCACCCAAAAAGACTCGATCCAAATTTGTTGAAAGACTTAACTTACTGGAGCTGGGATTTGCTGCATTCCTCTTTGTATGTGGTTGCTATGATTTTGTGCATGGGAAGCACAACTACTTCATCTACCTCTTCCTTCAGACCATAACATTCTCAATTGTAGGATTTGGCTATGTTGGCACCATTGTGTAA 1629 0.4494 MVDSEPKFFIPESIQGVNFDVTAQMRMVWEVIKAPLIVPLLNLAVYICLAMALMLFMERVYMGIVIILVKLFWKKPHQRYKFEPLQEDEELGNTNFPVVLVQIPMFNEKEVYKVSIGAACNLSWPADRLVIQVLDDSTDPAIKQMVEMECQRWASKGINITYQIRETRGGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRSIPFLVGNPDIALVQARWRFVNADECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVRFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVIPLTILVPEVHVPIWGAVYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTEKLGDSVNSNNKNKSGDAAKKNVATKAPKKTRSKFVERLNLLELGFAAFLFVCGCYDFVHGKHNYFIYLFLQTITFSIVGFGYVGTIV* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0812 542 Pfam Glycosyl transferase family group 2 190 396 IPR001173 -
Vra2g0812 542 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 377 IPR029044 -
Vra2g0812 542 PANTHER BNAC09G36340D PROTEIN 5 542 - -
Vra2g0812 542 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 316 IPR029044 -
Vra2g0812 542 CDD CESA_CaSu_A2 97 333 - -
Vra2g0812 542 PANTHER - 5 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0812 Vra-Chr2 7358862 7364912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0812 1 542 Miscellaneous Gene Families AT5G22740 81.801 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0812 K13680 - gmx:100791645 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0812 2 7358862 7364912 Vra2g0812 2 7358862 7364912 ECH