Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0797 ATGGCTCCGTTTCCGTCTGAGAACGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGATGAAGAAGAAGAAGACGAAGAAGAAGTGGAAGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATACCTTCTCTGCTAGCGAGTGACGCCGCGTCATGTATTGCCGTCGCCGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGTAATCAGGTTAAGGAATTCTCCGCACATGCTTCTGTTGTCAACGACCTTAGCTTTGATACAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTGATAAACAGCCTTTTCACTGATGAGAAATTAAAGTTTGATTACCATCGGCCAATGAAGGCAGTTGCCTTGGATCCTGATTATGCAAAGAAAATGTCCAGGAGATTTGTTGCTGGAGGTTTGGCTGGTCATTTATATTTGAATTCAAAGAAATGGCTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTGTGACATTTATTGAAAAACCACGAGGGAGCCCACGCCCCGAGCTTTTACTTCCTCACCTGGTCTGGCAGGATGATACCCTTTTGGTAATTGGATGGGGAACATCTGTCAAAATTGCTTCAATAAGGACAATAAGGGCAGCGAATGGGTCGTTCAGGCAGGTTCCTTTGTCTGTTGTGGCCCAGGTGGATATCGTAGCATCTTTCCAAACCAGCTATTTCATCTCAGGGCTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTTGCATATATTCCCGGAGAAGATGGAGATAAGGATTTTAGTAGCTCAGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAACAATGATGAGCTTTCAACTGATGCTCTGCCAGTACATGGGTTCGAGCATTACAGAGCGAAAGACTACTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAGCCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCATTGGCTGTGGTTGAATCTGGGCAGGGACGAAGTGAACTACTGGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAAGCAGCATCTCTGTGTCCCAAGTTGCTTCGGGGATCAGCTCCAGCTTGGGAGAGATGGGTTTTCCATTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGACACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATTCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCTTCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCGTCCATGACTGATTCACTTAAGGAGGCACTGGCAGAGTTGTATGTAATCAATGGGCAATACGAGAAGGCCTTCTTGTTGTATGCCGATCTTATGAAACCAGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGCAATTCGTGGAAAGATTGTTCAATTAATGATGCTAGATTGCAAGCGTGCAGTTACTTTGTTGATCCAAAATAGGGACTTAATAAGTCCACCCGAAGTTGTGAAGCAACTTCTAAAGGCTGATGATAAGAGTGATCGTAGATATTTTTTGCATTTATATCTTCATTCATTATTTGAAGTAAATCCTCATGCCGGGAAAGACTTCCATGATATGCAGGTAGAACTCTACGCTGACTATGATCCAAAGATGCTACTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGGGACCTATTGAGGGAGCAAGTCTTCATTCTAGGAAGGATGGGAAACTCAAAACAAGCCCTAGCTGTTATTATAAACCATTTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCACGATGATGAACTTTGGGAAGAATTGATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTGTTGGAGCACACGGTTGGAAATCTGGATCCCCTTTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCTCGGCTCCGGGATCGACTGGTTAAGATTATCACTGACTACAGGACCGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAATAAAGTATTACAACGAGGCAAGGCATGGAGTTTCTTTAGGTAATGAAGAAGATGAGACACGAGTTAAAATGAGTGACACTCGTGCTTCTCAGGTATTTGACAAATCCCTGAGTCTGAGAACTATGGAGATGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCATACAACTTGTCTCATGGATTCCTCTTACACTAGTAGTAACAAGAAAGAAACCACGTCCCTAGAGGCAGGAATGTATAATGGTTACAATGGTTATGAGGACGATGCTAGCGATGACATTGAAGATGAAGAAACCAAGTCGGGTGGCCCACGAATGCGCTGTATATTGTGTACTACTGCTTCTAGTTGA 2859 0.4369 MAPFPSENGVEGDDEREEEDEEEEDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFDYHRPMKAVALDPDYAKKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRVTFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTIRAANGSFRQVPLSVVAQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEDGDKDFSSSAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSAPAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYEKAFLLYADLMKPEVFDFIDKHNLHDAIRGKIVQLMMLDCKRAVTLLIQNRDLISPPEVVKQLLKADDKSDRRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINHLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYNEARHGVSLGNEEDETRVKMSDTRASQVFDKSLSLRTMEMKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLMDSSYTSSNKKETTSLEAGMYNGYNGYEDDASDDIEDEETKSGGPRMRCILCTTASS* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0797 952 MobiDBLite consensus disorder prediction 1 40 - -
Vra2g0797 952 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 951 - -
Vra2g0797 952 MobiDBLite consensus disorder prediction 11 36 - -
Vra2g0797 952 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 951 IPR045111 GO:0006623
Vra2g0797 952 SMART CLH_2 606 753 IPR000547 GO:0006886|GO:0016192
Vra2g0797 952 SMART WD40_4 171 207 IPR001680 GO:0005515
Vra2g0797 952 SMART WD40_4 83 122 IPR001680 GO:0005515
Vra2g0797 952 Gene3D - 7 268 IPR015943 GO:0005515
Vra2g0797 952 PIRSF Vps41 1 908 IPR016902 GO:0034058|GO:0046907
Vra2g0797 952 Gene3D Tetratricopeptide repeat domain 539 812 IPR011990 GO:0005515
Vra2g0797 952 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 606 753 IPR000547 GO:0006886|GO:0016192
Vra2g0797 952 SMART ring_2 867 947 IPR001841 -
Vra2g0797 952 SUPERFAMILY WD40 repeat-like 55 248 IPR036322 GO:0005515
Vra2g0797 952 Pfam Region in Clathrin and VPS 606 749 IPR000547 GO:0006886|GO:0016192
Vra2g0797 952 Coils Coil 12 36 - -
Vra2g0797 952 SUPERFAMILY RING/U-box 860 904 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0797 K20184 - gmx:100804340 1753.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0797 2 7142508 7161031 Vra2g0797 2 7142508 7161031 ECH