Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0793 ATGGCTCCAAAACGTGGTGAGAAGTTGGTGGTGAGATCCACCAAGAAAGTTGTGGAATCAAGCGTGGAAGTATCGGTTGTAAGCACCGGCAGCAGAAGACAAACACGGGGAAACAAAGAAACAGAAGAGGCAGAAGGTGTCAAAGAGCATGTGATGGTTATTCCTGTTGAAGAAGTGAATCATCCTGAAGCGCGGAAGGATTCATCTACCTCTGCCATTACTGAGGAAAACAAAGGTGAGAAAAACAACACTGGTGAAGATGGTGGAGTGCAGAATGAAGAGAAAGAGAAGAAGGAAGAGGATGAGGGAGTGAAGGATGAGAAGGAGGAGGAGAAGGCAAAGATATCAAAAGGGTCAAATGGAAAAGAGAGAAAAAAGGGGAAAAAGAAGGGAAGGAAAAGTGCAGAAGGGTATCAGAGGTATGTGTATAGGGTGTTGAAGCAGGTGCACCCTGAAATGGGAATCTCTGCCAAATGCATGACTGTTCTAAACAATTTGATGAATGACATGTTTGAGAGATTGGCTGGTGAAGCTGCTAAACTGAAGGACTACACTGGACACATGACATTGTCTTCAAGGGAGATCCAAGGAGCAGTGAAGCTGGTTTTACCAGGAGAGCTTGGGAAGCATGCCATTGCAGAAGGTGTCAAAGCTGTGAATAAATTCACCTCCTATGATTCTGATGAATAG 690 0.4464 MAPKRGEKLVVRSTKKVVESSVEVSVVSTGSRRQTRGNKETEEAEGVKEHVMVIPVEEVNHPEARKDSSTSAITEENKGEKNNTGEDGGVQNEEKEKKEEDEGVKDEKEEEKAKISKGSNGKERKKGKKKGRKSAEGYQRYVYRVLKQVHPEMGISAKCMTVLNNLMNDMFERLAGEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNKFTSYDSDE* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0793 229 PANTHER HISTONE H2B.2 1 226 - -
Vra2g0793 229 MobiDBLite consensus disorder prediction 18 34 - -
Vra2g0793 229 Coils Coil 90 111 - -
Vra2g0793 229 MobiDBLite consensus disorder prediction 1 133 - -
Vra2g0793 229 Pfam Core histone H2A/H2B/H3/H4 88 201 IPR007125 GO:0003677
Vra2g0793 229 Gene3D Histone, subunit A 102 225 IPR009072 GO:0046982
Vra2g0793 229 PRINTS Histone H2B signature 138 156 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0793 229 PRINTS Histone H2B signature 157 177 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0793 229 PRINTS Histone H2B signature 179 196 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0793 229 PRINTS Histone H2B signature 196 209 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0793 229 PRINTS Histone H2B signature 209 222 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0793 229 SUPERFAMILY Histone-fold 110 224 IPR009072 GO:0046982
Vra2g0793 229 SMART h2b3 128 224 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0793 229 MobiDBLite consensus disorder prediction 35 120 - -
Vra2g0793 229 PANTHER HISTONE H2B 1 226 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0793 Vra-Chr2 7076239 7077399 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0793 K11252 - gmx:100786873 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0793 2 7076239 7077399 Vra2g0793 2 7076239 7077399 ECH