Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0784 ATGGCACTCCCACACTCCATCTCTGCGTTATCAACCACGCTCACGCTTTCCTCCTCGGTGAACAAACCCACCACCAATAAAGTGAATTCCTTTCCCTTCTTCTCGAACAAGGGTACCGAATTTTTCACGAAAGAAACTCGACCCAGAAGCGGAAGAAGCCCTTTGCTTACCCCTGCACGCGTTGCGGCGCCACCCTCAACGGTTGAAACCGATCAGTCGTTCCCTGAAACCGAAAAGGAGGAGAATGAGGAAGAGTTTAACGAGGAGAGCTCTTCCTCTAAGTTCACTTGGAGGGATCACTGGTACCCTGTTTCGTTAATTGAGGATCTGAACCCTCTCTTACCCACACCTTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTACGACAAGTCCACTTCCCAATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTATCTGAAGGAAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTACCATGGGTGGTCTTTTGATGGTTGTGGATCTTGTGTTAAGATTCCTCAGGCTGCATCTGAAGGTCCGGAGGCACGTGCTGTTCGATCTCCTAAAGCGTGTGCCACTAGGTTCCCTACTTTAGTGTCTCAGGGGTTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAGTGCCTCCAAGCCTCCAATGTTGCCTGATGACTATGAAAAACCGGAGTTTGCCACTGTCAATATTCAGCGCGATCTGTTCTATGGTTACGATACTCTAATGGAGAATGTCTCTGATCCTTCTCACATTGATTTTGCTCATCACAAGGTCACAGGAAGGAGGGACAGAGCCAAGCCTCTGCCATTCAAGATGGATGCTCGTGGTTCATGGGGCTTTTCTGGAGCGAATGAAGGGAACCCTAAAATCAGTGCTAAATTTGTTGCACCTTGTTATTATATTAACAAGATTGAGATTGATACCAAACTCCCTGTAGTTGGTGATCAGAAATGGGTTGTATGGATATGTTCCTTCAATGTCCCCATGGCACCTGGTAAGACTCGCTCCATAGTTTGCAGTGCTCGAAACTTCTTCCAGTTCACAGTGCCAGGGCCTGCCTGGTGGCAAGTAGTTCCTAGATGGTATGAGCATTGGACTTCGAATAAAGTATATGATGGGGACATGATAGTCCTTCAAGGGCAAGAGAAAATCTTCCTTTTACAAACGAAGGAAGGAGGCGACATTAACAAACAGTACACCAGCATCACCTTCACACCAACACAGGCAGATCGCTTTGTCTTGGCATTTCGAAACTGGCTGAGGCGACATGGCAATGGCCAACCAGAATGGTTTGCCAACATCAGCAACCTGCCATTACCATCAACAGTTTTATCCAAACGTGAGATGTTGGATAGATTTGAACAGCATACTCTGAAGTGTTCATCATGTAAAGGAGCTTATGAGGGATTCCAAATATGGCAGAAAGTCCTAATTGGTGCAACAGTTATATTTTGTGCAACATCAGGGATTCCAGCTGATGTCCAGTTTCGTGTTCTTTTGGCAGGACTTGCAATTGTCAGTGCTGCCTTAGCTTTTACCCTAAACCAGCTCCAAAAGAATTTTGAATTTGTCGATTACGTGCATGCAGAAATCGAATAA 1644 0.4629 MALPHSISALSTTLTLSSSVNKPTTNKVNSFPFFSNKGTEFFTKETRPRSGRSPLLTPARVAAPPSTVETDQSFPETEKEENEEEFNEESSSSKFTWRDHWYPVSLIEDLNPLLPTPFQLLGREIVLWYDKSTSQWVAFDDKCPHRLAPLSEGRIDEDGKLQCSYHGWSFDGCGSCVKIPQAASEGPEARAVRSPKACATRFPTLVSQGLLFVWPDENGWEKASASKPPMLPDDYEKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDARGSWGFSGANEGNPKISAKFVAPCYYINKIEIDTKLPVVGDQKWVVWICSFNVPMAPGKTRSIVCSARNFFQFTVPGPAWWQVVPRWYEHWTSNKVYDGDMIVLQGQEKIFLLQTKEGGDINKQYTSITFTPTQADRFVLAFRNWLRRHGNGQPEWFANISNLPLPSTVLSKREMLDRFEQHTLKCSSCKGAYEGFQIWQKVLIGATVIFCATSGIPADVQFRVLLAGLAIVSAALAFTLNQLQKNFEFVDYVHAEIE* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0784 547 Pfam Rieske [2Fe-2S] domain 100 183 IPR017941 GO:0051537
Vra2g0784 547 Gene3D - 240 442 - -
Vra2g0784 547 MobiDBLite consensus disorder prediction 44 91 - -
Vra2g0784 547 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 101 213 IPR017941 GO:0051537
Vra2g0784 547 Pfam Pheophorbide a oxygenase 309 401 IPR013626 GO:0010277
Vra2g0784 547 SUPERFAMILY Bet v1-like 208 442 - -
Vra2g0784 547 CDD Rieske_RO_Alpha_PaO 95 224 - -
Vra2g0784 547 PANTHER PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC 30 546 - -
Vra2g0784 547 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 30 546 - -
Vra2g0784 547 Gene3D - 96 239 IPR036922 GO:0051537
Vra2g0784 547 SUPERFAMILY ISP domain 94 219 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0784 Vra-Chr2 7006927 7011397 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0784 K13071 - gmx:778121 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0784 2 7006927 7011397 Vra2g0784 2 7006927 7011397 ECH