Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0780 ATGCATCTAGCAATGGCAGCCAACGCTGTCGTCGCTCCGTCACCGTTCCAACCCAGCTCGCTTCTCCGGTCATCATTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCCTAACCTTTTCCCGCTCGAGGGCCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTTGCCGTCCTCAAGGGAACCTCCGCCGTCGAAGGCGTAGCCACCCTAACACAAGAAGACGATGGCCCAACAACGGTTACTGTTCGCATTACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTTCATGAGTATGGTGATACCACAAATGGGTGTATTTCGACAGGAGCACATTTTAATCCTAAAAAATTGACACATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGGGTTGCAGAGGTTTCAATCGTGGATAATCAGATACCACTCTCTGGCCCCAATTCAGTAGTTGGAAGAGCCTTGGTGGTTCATGAGCTTGAGGATGATCTCGGAAAGGGGGGTCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTGGTTGGTTTGACTCCGGCATAA 615 0.5187 MHLAMAANAVVAPSPFQPSSLLRSSFSGVSVKLTPQSLTFSRSRALTVFAATKKAVAVLKGTSAVEGVATLTQEDDGPTTVTVRITGLTPGLHGFHLHEYGDTTNGCISTGAHFNPKKLTHGAPEDEIRHAGDLGNIVANADGVAEVSIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPA* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0780 204 CDD Cu-Zn_Superoxide_Dismutase 53 196 IPR001424 GO:0006801|GO:0046872
Vra2g0780 204 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 51 202 - -
Vra2g0780 204 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 51 202 IPR024134 -
Vra2g0780 204 Gene3D Superoxide dismutase, copper/zinc binding domain 49 203 IPR036423 GO:0006801|GO:0046872
Vra2g0780 204 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 94 104 IPR018152 -
Vra2g0780 204 PRINTS Cu-Zn-superoxide dismutase family signature 94 116 IPR001424 GO:0006801|GO:0046872
Vra2g0780 204 PRINTS Cu-Zn-superoxide dismutase family signature 130 139 IPR001424 GO:0006801|GO:0046872
Vra2g0780 204 PRINTS Cu-Zn-superoxide dismutase family signature 149 171 IPR001424 GO:0006801|GO:0046872
Vra2g0780 204 PRINTS Cu-Zn-superoxide dismutase family signature 174 200 IPR001424 GO:0006801|GO:0046872
Vra2g0780 204 Pfam Copper/zinc superoxide dismutase (SODC) 65 199 IPR001424 GO:0006801|GO:0046872
Vra2g0780 204 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 188 199 IPR018152 -
Vra2g0780 204 SUPERFAMILY Cu,Zn superoxide dismutase-like 54 201 IPR036423 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0780 Vra-Chr2 6960647 6964632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0780 K04565 - gmx:100815376 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0780 2 6960647 6964632 Vra2g0780 2 6960647 6964632 ECH