Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0738 ATGGCCTTCAAAACACTGTTCCATAGCACTTTGGTTTTGCTTTTTGCTTTTTCATTTTGTGTTTTGGAGGCCAATGCTCGCACTCTCCAAGATGCCTCGATGCGTGAAATGCACGAGCAGTGGATGATTACACATGGAAAACTCTACTTGGACTCTTACGAGAAAGAGCAGAAATACCAAGTATTCAAGGAAAACGTGCAACGCATTGAGGCATTTAACAATGCTGGAAACAAGCCTTACAAGCTTGGCATAAACCAGTTTGCTGATCTCACAAATGAGGAATTCAAAGCCAGAAATAGATTCAAGGGTCATATGTGTTCTACCATAACAAGAACACCCTCTTTTAAGTATGAACATGTCACAGCAGTGCCAACTTCATTGGATTGGAGACAGAAAGGAGCTGTTACACCCATTAAGAACCAAGGACAATGTGGATCTTGTTGGGCATTTTCTGCTGTTGCAGCAACAGAAGGAATCACTAAGCTGACCACTGGCAAACTGATATCTTTATCGGAACAAGAGCTTATTGATTGTGACACAAAGGGTGAGGATGAAGGTTGTGAAGGAGGTTTAATGGACGATGCCTTCAAATTTATCCTGCAAAACAAAGGACTTACAACAGAAGCTGCGTACCCTTATGAAGGAATCGATGGAATCTGTGATGCAAAAGCAGAAAGCAGCCATGCAGCTAGCATAAAGGGGTACGAGGATGTGCCTGCGAATAGTGAGAGTGCGTTGCTGAAAGCTGTTGCTAATCAACCAGTTTCAGTAGCAATTGATGCGAGTGGATATGAGTTTCAGTTTTATTCAAGTGGTGTGTTCAATGGATCATGTGACACTAACTTGGATCATGGTGTGACTGCTGTGGGGTATGGAGTGAGTGATGATGGAAGTAAGTATTGGTTGGTGAAGAATTCATGGGGAGTGAAGTGGGGAGAAAAAGGATACATTAGAATGCAAAGAGATGTTGCTTCTAAAGAAGGCTTGTGTGGCATAGCAATGCTGGCTTCCTACCCAACTACATAA 1026 0.4259 MAFKTLFHSTLVLLFAFSFCVLEANARTLQDASMREMHEQWMITHGKLYLDSYEKEQKYQVFKENVQRIEAFNNAGNKPYKLGINQFADLTNEEFKARNRFKGHMCSTITRTPSFKYEHVTAVPTSLDWRQKGAVTPIKNQGQCGSCWAFSAVAATEGITKLTTGKLISLSEQELIDCDTKGEDEGCEGGLMDDAFKFILQNKGLTTEAAYPYEGIDGICDAKAESSHAASIKGYEDVPANSESALLKAVANQPVSVAIDASGYEFQFYSSGVFNGSCDTNLDHGVTAVGYGVSDDGSKYWLVKNSWGVKWGEKGYIRMQRDVASKEGLCGIAMLASYPTT* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0738 341 SMART Inhibitor_I29_2 38 95 IPR013201 -
Vra2g0738 341 SMART pept_c1 123 340 IPR000668 GO:0006508|GO:0008234
Vra2g0738 341 SUPERFAMILY Cysteine proteinases 30 340 IPR038765 -
Vra2g0738 341 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
Vra2g0738 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Vra2g0738 341 PANTHER - 22 340 - -
Vra2g0738 341 Pfam Papain family cysteine protease 123 339 IPR000668 GO:0006508|GO:0008234
Vra2g0738 341 Gene3D Cysteine proteinases 19 341 - -
Vra2g0738 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Vra2g0738 341 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 22 340 - -
Vra2g0738 341 PRINTS Papain cysteine protease (C1) family signature 141 156 IPR000668 GO:0006508|GO:0008234
Vra2g0738 341 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Vra2g0738 341 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Vra2g0738 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 141 152 IPR000169 -
Vra2g0738 341 CDD Peptidase_C1A 124 339 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0738 Vra-Chr2 6371730 6373337 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0738 - - gmx:100778111 592.038