Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0714 ATGGCGGAACCTGTCGCTAACACCCAACTCTCTCCCTCGAAAACCCTAGACTCAACCAACGGTCATGATTCTACTTTGGAACCGAATCAAATGCTTCCACAAGACGCTCAAATCAATCAAGAAAACGACGGCGTCGTTTCGACGAGGAAACGGAGTAGGGAAGACGACGACGGCGAGGAGCGATCGCTTCATCCCCTGTGGAAGACCAGCCTCTGCTCCTACTACAGGAGCCACAACAACTCATGCAACCACGGCGACACGTGCCGCTACGCGCACGGCGAGGAGGAACTCCGCCCTCGCCCCGATAACACATGGGACCCGACCTCCGAGCGCGCGAAGAAGGCATTAAAGACAGAGACGGGCGAAAAGTGCTCCGTCTCGGAGGACGTGATGATGACGGAAGCTGTTGTCGACGGCGACGATTACGATTCCAATCACGCGCTTAGCAAATGTTTGGTGCATTTGCCGCGTAAGTGGAGTTCCGAGAATTTGAGGAATTTTCTCAGCGAACAGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATCGGTTTTGTTACCTTTGAAGATGAAGAACAATTGAAGAGTTCATCAAAGGATTTAGAAGGAAAAACAATTGGCAACAAAACGGTAAAGGTTGCTGATGTCATTCCTCGGTCATTTCAAAAGAAAAGTAACTCCGGTGTTGCTTCCAATCAAGAATTGGATGAAGGGGACGATCCTTCGAGTGGAGCTTTAGATGCTGAAACAAATAACGACAAGTTGTCTGTTGATGGTTCTGTGTCTAAGACAAGAAATTTGCGTGATGTAGTGACTCCTCTGGCTCACATCACCTACGATGATCAGTTGGAGCAGAAAAAAGCCTCTCTCATGCAGATTCTCAAAAAGCTTACAAGAAATGCTCGCAAAGCTTGTCCAAATGGGGTTTCTCTTCCTGAGTGGATTCTCAAGTCGAGGGAAATAGGTGGTCTTCCGTGCAAACTAGAAGGTATTATTGCATCTCCAATTGTAAATGGATACCGGAACAAGTGTGAATTCTCTGTTGGATATTCTCTGGAAGGCAATGTGACTGTAGGTTTCATGCTGGGAAACTTCAGGGAAGGTGTAACAGCAGTCGAGGAAGCAACCGAGTGCCCAAATGTTTCAACGATTGCTTGCAAATATGCTACAATGTTTCAGGAATTTCTGCAGCACAGTGATTTACCGGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGCAGAACAAACGGGAATACTGATCATGCTGAAACTTTTGGTAGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAACTTTGATGATGCATTAGTAGCTTCTGAATTTAAGAGGCTTGCTCACGCATTTGTTGCTGGAGCTACTTCGCATTGTCCAACATTACCGCTCACAGCTCTGTTTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCTGCTGATGCACCACTGCGTTTGCTACCACTTCCTAAAGCAGGTGGGGATCCTGAGATCAATGAAAACAATAATGCCATGGATGTAAGAATCCATGATTATATCAACAATCTCAGGTTCTCTATATCTCCAACCGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTACTATTTGATATATGCTGCGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCAGTGTCTGATGCCCATAGGAACGCTGAGATTAATGGCATAAAAAACATTAGATTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTCAATATGACTAAGAAGCAAGATGATTCTAATACCCCTAAAAATGGCAATGACATTCCTGAGGATAGTGCCTGCCCAGAGGCTGAAAAGGGAGAAATGACATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAAGTGAAGTTCAGAACGGTGGCACCTCTGAACAAGTTGACGGGATATCTGAACAGACAGAGAACTTGACAGGTTCTCAGTTAAGGGATGATGGAAATGTGCCTAAGGAACATAGCGACGATCCAAATGTCTGTGGAGGTGGCAATGACATTCCTGGGGATAGTACCTGCTCAAGGCCTGAAACCAGTGATATGACATCTCCTTCAGAAGATAACAAGGCAGAAGTTGGAAGTGAAGATCAGAAGGTTAATTCTTCTGAAAATGGGAACACTTCCATGCAACAGTTCAAAAATGTTGTTGCCATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTAATCAAAGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAAGTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCGCAAAAATTGAGAAAGGTAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCAAGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAGTTGGTTATGCTTCTTGAGAGGTAG 2670 0.4521 MAEPVANTQLSPSKTLDSTNGHDSTLEPNQMLPQDAQINQENDGVVSTRKRSREDDDGEERSLHPLWKTSLCSYYRSHNNSCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETGEKCSVSEDVMMTEAVVDGDDYDSNHALSKCLVHLPRKWSSENLRNFLSEQGIAFKHAKKKKGMMIGFVTFEDEEQLKSSSKDLEGKTIGNKTVKVADVIPRSFQKKSNSGVASNQELDEGDDPSSGALDAETNNDKLSVDGSVSKTRNLRDVVTPLAHITYDDQLEQKKASLMQILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGNVTVGFMLGNFREGVTAVEEATECPNVSTIACKYATMFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTNGNTDHAETFGSIAEVMLIVQVSTANFDDALVASEFKRLAHAFVAGATSHCPTLPLTALFVQDHQGISNVAPADAPLRLLPLPKAGGDPEINENNNAMDVRIHDYINNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIRFICSKAEDVMGSLLREYLNMTKKQDDSNTPKNGNDIPEDSACPEAEKGEMTSHCPENNNAEVGSEVQNGGTSEQVDGISEQTENLTGSQLRDDGNVPKEHSDDPNVCGGGNDIPGDSTCSRPETSDMTSPSEDNKAEVGSEDQKVNSSENGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPAKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0714 889 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 82 889 IPR045850 -
Vra2g0714 889 Gene3D - 151 220 IPR012677 -
Vra2g0714 889 MobiDBLite consensus disorder prediction 1 62 - -
Vra2g0714 889 CDD RRM_SF 151 216 - -
Vra2g0714 889 SUPERFAMILY CCCH zinc finger 64 99 IPR036855 GO:0046872
Vra2g0714 889 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 273 889 IPR010280 GO:0006396|GO:0008173
Vra2g0714 889 SMART c3hfinal6 66 94 IPR000571 GO:0046872
Vra2g0714 889 ProSitePatterns RNA methyltransferase trmA family signature 1. 784 816 IPR030390 -
Vra2g0714 889 Pfam tRNA (Uracil-5-)-methyltransferase 773 824 IPR010280 GO:0006396|GO:0008173
Vra2g0714 889 Pfam Methyltransferase domain 571 629 IPR025714 -
Vra2g0714 889 MobiDBLite consensus disorder prediction 46 62 - -
Vra2g0714 889 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 276 889 IPR029063 -
Vra2g0714 889 MobiDBLite consensus disorder prediction 670 709 - -
Vra2g0714 889 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 82 889 - -
Vra2g0714 889 MobiDBLite consensus disorder prediction 248 262 - -
Vra2g0714 889 MobiDBLite consensus disorder prediction 641 772 - -
Vra2g0714 889 MobiDBLite consensus disorder prediction 226 241 - -
Vra2g0714 889 CDD AdoMet_MTases 573 627 - -
Vra2g0714 889 MobiDBLite consensus disorder prediction 735 752 - -
Vra2g0714 889 Coils Coil 283 303 - -
Vra2g0714 889 MobiDBLite consensus disorder prediction 226 262 - -
Vra2g0714 889 SUPERFAMILY RNA-binding domain, RBD 154 228 IPR035979 GO:0003676
Vra2g0714 889 Gene3D Vaccinia Virus protein VP39 515 888 IPR029063 -
Vra2g0714 889 ProSiteProfiles Zinc finger C3H1-type profile. 66 95 IPR000571 GO:0046872
Vra2g0714 889 Gene3D - 58 100 - -
Vra2g0714 889 MobiDBLite consensus disorder prediction 1 45 - -
Vra2g0714 889 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 94 IPR000571 GO:0046872
Vra2g0714 889 MobiDBLite consensus disorder prediction 97 120 - -
Vra2g0714 889 Gene3D Vaccinia Virus protein VP39 277 343 IPR029063 -
Vra2g0714 889 Gene3D - 344 429 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0714 K15332 - gmx:100816103 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0714 2 6113934 6119781 Vra2g0714 2 6113934 6119781 ECH