Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0698 ATGAAAGTGACACAGATTCTGTTGGTTCTGATTTGGTTCTTCTGCATTTATGTCTCTACTTCGTTTTCCGCAAATGTCACTTACGACCATAGAGCATTGGTCATTGATGGCAAGCGCCGAGTCTTGGTCTCTGGTTCTATCCATTACCCTCGTAGCACTCCAGAGATGTGGCCAGACCTCATTCAAAAGTCCAAAGATGGAGGACTTGATGTTATTGAGACTTATGTTTTCTGGAACTTACACGAACCGGTTCAAGGCCAGTATAATTTTGAAGGTAGGGCAGATTTGGTTAAATTTGTGAAGACAGTAGCAGCAGCAGGCCTATACGTGCATCTCCGGATTGGTCCATACGCATGTGCTGAATGGAACTATGGCGGTTTCCCTCTTTGGCTACATTTTATACCAGGAATTCAATTCCGAACTGATAACAAACCATTTGAGGAAGAAATGAAGCGGTTCACCGCTAAAATTGTAGATATGATGAAGCAAGAGAACCTCTATATGTCACAGGGAGGACCTATTATTTTGTCTCAGATTGAAAATGAGTATGGGAACATTGATGCGGATTATGGTCCAGCTGCTAAATCCTATATCAAATGGGCAGCATCAATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGCTAGATGCTCCTGACCCAATTATTAACACATGCAATGCATTTTACTGTGACCAATTCCAACCGAATTCTAAGGCAAAACCAAAAATATGGACGGAGGGTTATACTGGATGGTTTCTTGCATTTGGTGATGCTTTACCTCACAGACCTGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTTCCAACGAGGGGGAACTTTCAACAATTACTATATGTACCATGGAGGGACAAACTTTGGCCGGGCTTCTGGTGGGCCTTTTGTTGCTAGTAGTTATGATTATGATGCTCCAATTGATGAGTATGGAACTATTAGACAGCCTAAGTGGGGCCACCTTAAAGACTTGCATAAGGCCATTAAACTTTGTGAAGAAGCACTGATAGCTACTGATCCAACAATTACATCTCTTGGACCAAATATAGAGGCTGCAGTTTACAAGACAGGATCTGCCTGTGCTGCCTTCCTTGCCAACAACGATGTCACATCTGATGCAAATGTGACCTTCAATGGAAATTCATATGACCTGCCCGCGTGGTCTGTCAGCATCTTACCAGACTGCAGGAATGTAGTGCTTAATACTGCAAAGATTAGTTCTGTATCTACAATTTCAAGCTTCAAAACTGAACCTTTAAAAGAAGAGATTGGTTCTTCGGATGATTCTTGCTCAGGATGGAGTTGGATTAGTGAACCTGTTGGCATTTCAAAGGCTGATTCATTCTCAAAAATTGGGCTAGTGGAGCAAGTAAACACAACTGGTGATAGAAGTGATTACTTGTGGTACTCATTAAGCATCGATCTTGATGTTGGTACTCAAGCTGTCCTTCACATTGAATCTCTTGGTCATGCTCTTCATGCTTTCATAAATGGGAAGCTTGCAGGCAGTGGAACGGGAAACAAAGTCAAAGTAGACATCCCCGTCACACTAGTGGCTGGGAAGAACACAATTGATTTACTGAGTTTAACTGTTGGGCTCCAGAACTACGGAGCATTTTTTGACACAGCGGGTGCAGGAATCACTGGCCCTGTTATACTGAAAAGTTTGACCGATGGTAGCTCTCTTGATCTGTCCTCCCAGAATTGGACATATCAGATAGGTCTTAAAGGTGAAGATTTGGGGCCATCTAGTGGCAGTTCTGGCCAGTGGAATTCACAATCTACTTTACCTACAAACCAACCATTGATTTGGTACAAGACAAACTTTGCTTCCCCCTCTGGTAGTGATCCAGTTGCAATTAACATGACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGAAGGTACTGGCCTACGTATGCTTCTCCAAGTGATGGTTGTACTGATACCTGCAATTATAGAGGGGCCTATCGAGCATCCAAATGTCTCAAGAACTGTGGAAAGCCATCACAAACATTATACCATGTACCACGATCATGGTTACAACCTAAAAGCAACACACTTGTTTTGTTTGAGGAAATTGGAGGCAACCCTGAGCAAATCACTTTTGCTACAAAACAGATTGCAAGTGTGTGTTCTCATGTATCTGAATCTCACCCTCCTCATGTAGACTTGTGGAATTCAGATGCAGAATCAGGAAGAACAGTAGGGCCTGTACTGTTACTGGAATGCCCTTATCCTAATCAGGTGATCTCCTCCATTAAATTTGCAAGTTTTGGAACACCTCATGGGACTTGTGGAAACTTTAAACATGGAAACTGCAGTAGCAATAAGGCTCTATCCGTTGTGCAGAAGGGCTGCATTGGATCATTCAGTTGCAGAATTGAACCATCAATTAATACATTCGGAGATCCATGTAAAGGAGTAGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATAG 2505 0.4295 MKVTQILLVLIWFFCIYVSTSFSANVTYDHRALVIDGKRRVLVSGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVQGQYNFEGRADLVKFVKTVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNKPFEEEMKRFTAKIVDMMKQENLYMSQGGPIILSQIENEYGNIDADYGPAAKSYIKWAASMATSLDTGVPWVMCQQLDAPDPIINTCNAFYCDQFQPNSKAKPKIWTEGYTGWFLAFGDALPHRPVEDLAFAVARFFQRGGTFNNYYMYHGGTNFGRASGGPFVASSYDYDAPIDEYGTIRQPKWGHLKDLHKAIKLCEEALIATDPTITSLGPNIEAAVYKTGSACAAFLANNDVTSDANVTFNGNSYDLPAWSVSILPDCRNVVLNTAKISSVSTISSFKTEPLKEEIGSSDDSCSGWSWISEPVGISKADSFSKIGLVEQVNTTGDRSDYLWYSLSIDLDVGTQAVLHIESLGHALHAFINGKLAGSGTGNKVKVDIPVTLVAGKNTIDLLSLTVGLQNYGAFFDTAGAGITGPVILKSLTDGSSLDLSSQNWTYQIGLKGEDLGPSSGSSGQWNSQSTLPTNQPLIWYKTNFASPSGSDPVAINMTGMGKGEAWVNGQSIGRYWPTYASPSDGCTDTCNYRGAYRASKCLKNCGKPSQTLYHVPRSWLQPKSNTLVLFEEIGGNPEQITFATKQIASVCSHVSESHPPHVDLWNSDAESGRTVGPVLLLECPYPNQVISSIKFASFGTPHGTCGNFKHGNCSSNKALSVVQKGCIGSFSCRIEPSINTFGDPCKGVAKSLAVEASCA* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0698 834 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Vra2g0698 834 SUPERFAMILY Galactose-binding domain-like 399 565 IPR008979 -
Vra2g0698 834 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
Vra2g0698 834 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Vra2g0698 834 ProSiteProfiles SUEL-type lectin domain profile. 748 834 IPR000922 GO:0030246
Vra2g0698 834 Gene3D - 412 563 - -
Vra2g0698 834 SUPERFAMILY Galactose-binding domain-like 578 742 IPR008979 -
Vra2g0698 834 PANTHER BETA-GALACTOSIDASE 5 828 - -
Vra2g0698 834 PANTHER BETA-GALACTOSIDASE RELATED 5 828 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 Pfam Galactose binding lectin domain 756 833 IPR000922 GO:0030246
Vra2g0698 834 Gene3D Glycosidases 19 341 - -
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 610 624 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 PRINTS Glycosyl hydrolase family 35 signature 637 653 IPR001944 GO:0004553|GO:0005975
Vra2g0698 834 Gene3D - 564 727 - -
Vra2g0698 834 Pfam Beta-sandwich domain in beta galactosidase 345 415 IPR041392 -
Vra2g0698 834 Gene3D - 749 834 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0698 Vra-Chr2 5942996 5948760 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0698 23 687 Glycoside Hydrolase AT2G28470 74.926 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0698 - - gmx:100793198 1489.17