Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0690 ATGCATAGGATCGTCACCGCGAGGTCCATTTTTTCTGCTGTTTTCAGAAGCAAACCTCGGCCTCACTCTGCTGCTTTTTCCACATCCTTGCTCTTCGACGAAACTCAGATACAGTTTAAAGAAAGTGTTTCTCAGTTTGCAACGGAAAATATTGCCCCTCATGCTTCAAAAATAGACCACACAAATTATTTCCCAAAGGAGGTGAACTTATGGAAAAGCATGGGGGAATTCAATCTCCTTGGGATTACTGCTCCAGAGGAATATGGAGGGCTTGGTCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGCGTCCGTTGGTCTTTCATATGGTGCTCATTCAAACTTGTGTGTCAATCAGCTGGTGAGAAATGGAAGTCCTGCTCAGAAAGCGAAATATTTACCAAAGCTTATTTCTGGGGATCACGTGGGAGCATTGGCAATGAGTGAGCCCAATTCTGGGTCCGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTCAATGGGAACAAGATGTGGTGTACTAACGGGCCAGTTGCTCAAACTTTAGTTGTCTATGCTAAAACAGACATAACTGCTGGATCAAAAGGCATTACGGCATTCATTATTGAGAAGGGAATGGCTGGATTCAGTACTGCCCAGAAATTGGACAAACTTGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAGGGAAAAGGAGTATATGTCATGATGTCTGGGTTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCTCTGGGTATTATGCAGGCATGTCTTGATGTTGTTCTTCCTTATGTTCGTCAAAGAGAGCAGTTTGGTCGTCCCATCGGGGAGTTTCAGTTTATACAGGGAAAAGTTGCTGACATGTATACTGCATTACAGTCCTCAAGGTCTTATGTGTATTCTGTAGCTCGAGAATGTGACAATGGAAAGGTTGACCCAAAGGTGCATCCACATGTTAAATTAGTTCTATTAAGCTTCATCATCGTGTGTGCGTGTGTTTTCTGTTTATGGAACTACATCCATATTTTTTCATATATTTCAAGAAAGGATTGTGCTGGAGCCATACTTTGTGCTGCTGAAAGAGCAACTCAGGTTGCTTTGCAGGCTATACAGTGTTTAGGTGGGAATGGGTACGTGAATGAGTATCCTACTGGTCGTTTCCTGAGAGATGCCAAACTCTACGAGATTGGAGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAGCAATAA 1338 0.4335 MHRIVTARSIFSAVFRSKPRPHSAAFSTSLLFDETQIQFKESVSQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASASVGLSYGAHSNLCVNQLVRNGSPAQKAKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMAGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTALQSSRSYVYSVARECDNGKVDPKVHPHVKLVLLSFIIVCACVFCLWNYIHIFSYISRKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRFLRDAKLYEIGAGTSEIRRMIIGRELFKEQ* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0690 445 Pfam Acyl-CoA dehydrogenase, middle domain 151 246 IPR006091 GO:0016627
Vra2g0690 445 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 26 269 IPR009100 GO:0016627
Vra2g0690 445 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 375 445 - -
Vra2g0690 445 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 1 345 - -
Vra2g0690 445 PIRSF PIGM 370 445 - -
Vra2g0690 445 PIRSF PIGM 29 125 - -
Vra2g0690 445 PIRSF PIGM 159 365 - -
Vra2g0690 445 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 153 165 IPR006089 GO:0003995
Vra2g0690 445 Pfam Acyl-CoA dehydrogenase, N-terminal domain 34 147 IPR013786 GO:0016627|GO:0050660
Vra2g0690 445 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 400 419 IPR006089 GO:0003995
Vra2g0690 445 Gene3D - 22 148 IPR037069 GO:0016627|GO:0050660
Vra2g0690 445 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 256 443 IPR036250 GO:0016627
Vra2g0690 445 PANTHER ACYL-COA DEHYDROGENASE 1 345 - -
Vra2g0690 445 PANTHER ACYL-COA DEHYDROGENASE 375 445 - -
Vra2g0690 445 CDD IVD 32 443 IPR034183 GO:0003995
Vra2g0690 445 Gene3D - 263 441 - -
Vra2g0690 445 Pfam Acyl-CoA dehydrogenase, C-terminal domain 258 351 IPR009075 GO:0016627
Vra2g0690 445 Pfam Acyl-CoA dehydrogenase, C-terminal domain 380 441 IPR009075 GO:0016627
Vra2g0690 445 Gene3D - 150 262 IPR046373 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0690 Vra-Chr2 5853571 5860707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0690 1 445 Acyl Lipid Metabolism Gene Families AT3G45300 77.978 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0690 K00253 - gmx:100794259 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0690 2 5853571 5860707 Vra2g0690 2 5853571 5860707 ECH