Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0686 ATGCTTAAAAATCAAAGTATGTTCTCTCTGACAAGAAATTGCTTCAAGTATCGTACTACCTACTTCAGGAGGAATATCCCAAGTGAAACCATACTCTCCACACTCTCATTTTGCCACAAATTTCATGAGCCCAATGAGAAATATTTACTGAAGATTGTTTTTTCTCATCACACCCACAAATTTGACCGCTCGTCATTCCAAATCAACAGTAGTTGCACTCAATTCCCTGTCCCATTTGCACCCTTTAGTTCTCCCTATTCAACAAAAGCTCCTTCAAGATCTTACCGAAGAAGAGCCAGAAATAGGTTGTTGAAGTCCTCCAAGCCTACCCTAGACCAAGCCCAATTTCAGTTGGCACTGTCCCAACTTCCCCCAAGGTTCACTAATGAAGAACTGTGCACTGTGATTGCTCGACAAGATAATCCCTTGGTTTGCTTAGAACTATTTCACTGGGCATCTCAACAGCCACGATTTCGGCATGATGTGTCCACGTTTCATGTCACCATAAAGAAGCTTGGTACGGCAAAGATGTTCCAAGAAATGGATGACATTGTGAACCAACTGATTGCAGTTCCTTTAATTGGTTCAGAGGCATTGTTCAACACAGTTATATATTATTTCACTCAGGCTCGGAAGCTTACTAGAGCTGTCAATGTGTTTAAGCACATGAAAAGTAAAAGGAATTTAATTTGCTGTTATAGGCCCTCCATTAGAACCTATAATATTCTTTTTGCTGCATTTTTGGGTAGAGGAAGCAACTCCTATATAAACCATGTGTATATGGAAACAATTAGATGTCTGTTTAGGCAAATGGTCAATGATGGGATCAAGCCTGATATTTTTTCATTAAATTCTATGATCAAAGGTTATGTTCTATCTCTTCATGTTAATGATGCATTGAGGATATTTCATCAAATGGGTGTGGTTTATGATTGTCAGCCCAATGCGTTGACATATGATTACTTGATTCATGGCTTGTGTGCCCAGGGCAGAACAAATAATGCCAAAGAGTTATTTAATGAAATGAAGACCAAAGGTTTTGTTCCTGGTAGTAAATCTTATAATTCGCTTGTCAACTCGTTGGCGCTTGGTGGAGAGATTGGGGAAGCAGTAACTTATCTGTGGGAGATGACCGATAAGCAAAGGTCACCTGATTTTATTACATGCAGGACTGTACTGGATGAGATATGCAGACAAAGAACAATTCAGGAGGGCATGGGTTTTTTGCAGGAGTTGCAAGAAAATGACCTTGTAGATGGGCATGCTTACAGGAAGCTTCTTTATGTGCTTGAAGATGACTATGGGAATTCAAAGGAATGTGAGTGA 1326 0.3974 MLKNQSMFSLTRNCFKYRTTYFRRNIPSETILSTLSFCHKFHEPNEKYLLKIVFSHHTHKFDRSSFQINSSCTQFPVPFAPFSSPYSTKAPSRSYRRRARNRLLKSSKPTLDQAQFQLALSQLPPRFTNEELCTVIARQDNPLVCLELFHWASQQPRFRHDVSTFHVTIKKLGTAKMFQEMDDIVNQLIAVPLIGSEALFNTVIYYFTQARKLTRAVNVFKHMKSKRNLICCYRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNALTYDYLIHGLCAQGRTNNAKELFNEMKTKGFVPGSKSYNSLVNSLALGGEIGEAVTYLWEMTDKQRSPDFITCRTVLDEICRQRTIQEGMGFLQELQENDLVDGHAYRKLLYVLEDDYGNSKECE* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0686 441 Pfam PPR repeat family 314 362 IPR002885 -
Vra2g0686 441 Gene3D Tetratricopeptide repeat domain 98 251 IPR011990 GO:0005515
Vra2g0686 441 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vra2g0686 441 PANTHER ATPASE EXPRESSION PROTEIN 3 14 438 - -
Vra2g0686 441 Pfam Pentatricopeptide repeat domain 200 247 IPR002885 -
Vra2g0686 441 Pfam PPR repeat 282 306 IPR002885 -
Vra2g0686 441 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 14 438 - -
Vra2g0686 441 Gene3D Tetratricopeptide repeat domain 252 431 IPR011990 GO:0005515
Vra2g0686 441 TIGRFAM PPR: pentatricopeptide repeat domain 200 226 IPR002885 -
Vra2g0686 441 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Vra2g0686 441 TIGRFAM PPR: pentatricopeptide repeat domain 318 350 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0686 Vra-Chr2 5813094 5817659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0686 178 441 Glycosyltransferase AT1G05670 24.535 1.66e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0686 - - var:108340576 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0686 2 5813094 5817659 Vra2g0686 2 5813094 5817659 ECH