Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0683 ATGTTACTGAAACTCAAGTTGTCTACACATTACATCGCCAGCAATCCCTCCAAGTTCCACATGGATGACACGTGTCTCTCTGTATTTTCTTCACACTCCCTTCATAAAACCACCTCTTTCTTTCATCTTCCACCTCAAATTCCATGTGTAATGGGAAACACAACTACCCTTTTGTTCTTGCTCTCAGTTCTTCTGTGTCATGGATCAATGGCCATCCCTGAAGGTGAAGAAGACAACTTGTTCTTGATGCATAAACCTAAGAGAATGGTGAAGACTGATGCAGGGGAAATGCTTGTGCTGAAAACCCAAAGTGGTTGTAGGAGGTTTTTAGATAGGCACATGCACATTGCCTTCATCACTATGGAATCAAACTCCTTGTTCGTCCCTCACTACCTTGACTCCAATCTCATCATATTCATCCATAAAGGAGAAGCAAATTTGGGATTCATATATGATGATGAACTGGTGGAAAGGAGATTGAAGGCAGGGGATGTGTATGTGATTCCATCAGGTTCAGCATTTTATTTTGTGAACATGGAGGAAGGTCAGAGACTTCACATCATCTGCAGCATTGACCCTTCTACAAGTTTGGGATTAGATACCTTCCATTCTTTCTATATTGGTGGAGGAGCCAATTCACACTCATTGTTTTCTGAATTCGGACCAGCTATTTTTGAAACTGCATTTAATGAATCAAGAATGGAGGTTGAAAGTATATTTTATAAGGAACTAGATGGGCCAATCATGTACATGGATGATTCTCATGCACCTAGCTTAGGGACTAAATTCCTTCAACTGAAGAAGGAAGAAAAAGAGCAACAACTGAACAAAATGCTGCAAGACCAAGAAGAAGAAAAAGAAGAGAAGAAGCAAACAAGTAGTCCATGGGAAAAGCTCTTGGACAATGTATTTGGCAAGGTGAATGAGAAGACAGAGAGCAAAAACAGTGTTGATTGGAGCAAGGCAACAAACCTCTATGACAAAAAATCTGATTTCAGAAACGATTATGGTTGGAGCAAAGCACTGGATGGAGTGCAGTATTCTCCACTCACCAAACCTGACACTGGCCTTTTCTATGTCTATCTCAAAGCTGGATCGATGTTGGGACCTCATGTGAATCCAAGGGCATCTGAGTATACCATAGTGCTGAAGGGCTGTGGGGAGCTTCATATAGTGTATCCAAATGGAAGCAAAGCAATTAGCATTGAAATCAAACAAGGGGACGTGTTTGTTGTTCCAAAATCATTCCCCTTATGTCAAATAGCATCAAGGAATGGACCCTTAGAGTTCTTTGGCTTTTCTACCTCTGCCAAAGAGCACAAGCCACTGTTTCTGGCTGGCTCTGTGTCCATTCTTAGGACCATGCTGGGGCCTCCGCTTGCGGCGGCGCTTGGGGTGAGTGTAGACACTTTGCGGCGTGCCCTTGATCCTCAGGATGAGCTTCTGATCTTTCCGTCAACATGGTCCGAACCAATAAGATCCATGGTAGAAGAAGAAGAACAAGTACACATGCTGTTAAAGGCTATCAGAAGCTTTGCTACTGATATATATAGTTTTCACAAAACAACGCAATCATATTGGGGGATCATCAAAATATACAATGAAACATAG 1611 0.4209 MLLKLKLSTHYIASNPSKFHMDDTCLSVFSSHSLHKTTSFFHLPPQIPCVMGNTTTLLFLLSVLLCHGSMAIPEGEEDNLFLMHKPKRMVKTDAGEMLVLKTQSGCRRFLDRHMHIAFITMESNSLFVPHYLDSNLIIFIHKGEANLGFIYDDELVERRLKAGDVYVIPSGSAFYFVNMEEGQRLHIICSIDPSTSLGLDTFHSFYIGGGANSHSLFSEFGPAIFETAFNESRMEVESIFYKELDGPIMYMDDSHAPSLGTKFLQLKKEEKEQQLNKMLQDQEEEKEEKKQTSSPWEKLLDNVFGKVNEKTESKNSVDWSKATNLYDKKSDFRNDYGWSKALDGVQYSPLTKPDTGLFYVYLKAGSMLGPHVNPRASEYTIVLKGCGELHIVYPNGSKAISIEIKQGDVFVVPKSFPLCQIASRNGPLEFFGFSTSAKEHKPLFLAGSVSILRTMLGPPLAAALGVSVDTLRRALDPQDELLIFPSTWSEPIRSMVEEEEQVHMLLKAIRSFATDIYSFHKTTQSYWGIIKIYNET* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0683 536 CDD cupin_7S_vicilin-like_C 331 480 - -
Vra2g0683 536 PANTHER OS03G0336100 PROTEIN-RELATED 55 491 - -
Vra2g0683 536 CDD cupin_7S_vicilin-like_N 89 259 - -
Vra2g0683 536 Coils Coil 261 292 - -
Vra2g0683 536 Gene3D Jelly Rolls 74 293 IPR014710 -
Vra2g0683 536 Pfam Cupin 110 189 IPR006045 -
Vra2g0683 536 Pfam Cupin 324 468 IPR006045 -
Vra2g0683 536 Gene3D Jelly Rolls 327 493 IPR014710 -
Vra2g0683 536 SMART Cupin_1_3 323 472 IPR006045 -
Vra2g0683 536 SMART Cupin_1_3 81 237 IPR006045 -
Vra2g0683 536 PANTHER OS03G0336100 PROTEIN 55 491 - -
Vra2g0683 536 SUPERFAMILY RmlC-like cupins 52 479 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0683 Vra-Chr2 5776581 5780737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0683 34 484 Miscellaneous Gene Families AT2G18540 28.898 2.76e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0683 - - vra:106755871 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0683 2 5776581 5780737 Vra2g0683 2 5776581 5780737 ECH