Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0648 ATGTTGGTGAGGCGTTTCTCGGTGAAATCGCGGTTGAATTGTGCTCTTCCCTCAATCGTATTTCCACACTGCTTCTCAAGCACCAATGAAAACGATGACGTACAGAAAGTGTTCGGCATACTTAGCAGCACTTCCACGCCGGAACAGCTGAAACAATCCTTGAAATCAAGCGGTGTTTTCCTCTCCAATGAATTGATCGATCAAGTTCTCAAGAGGGTTCGCTTCAGCCATGGGAACCCCTCCCAAACGCTTGAGTTTTTCCGTTACACCGGAAGAAGGAAAGGGTTTTACCATACTGCGTTTTCCCTCGACACCATGCTCTACATTCTTGGAAGAAGCCGCATGTTTGGTCACGTTTGGGACCTCTTAATCGAATGCCGTCGAAAAGACCAAACGGCCATAACGGCTCGCACCGTTATGGTCGTGTTGGGCAGAATTGCCAAAGTGTGTTCAGTTCGACAAACGGTGGACTCGTTTAGAAAGTTCAGGAAGCTGGTGACTGAGTTTGATACTAATTGTTTCAATGCTCTGTTGAGAACGTTGTGTCAGGAGAAGAGCATGACGGATGCTAGAAANGTTTACCATAGTTTNAAGCATCGGTTTCGNCCAAATTTACAGACTTTTAACATTCTTCTTTCCGGGTGGAAGACCCCTGAGGATGCTGAGGGGTTCTTGAAGGAGATGAAGGAAATGGGGGTGGCACCTGATGTTGTTACATACAATAGTTTGGTGGATGTTTACTGCAAGGGGAGGGAAATTGAGAAGGCGTATAAGGTGCTCGAGGAAATGCGTGAACGGGATTTGTCGCCGGATGTAATCACGTATACATGTATCATTGGTGGGTTGGGGTTGATTGGGCAGCCTGATAAAGCCAGAGATGTTTTGAAGGAGATGAAGGAGTATGGGTGTTACCCTGATGCTGCAGCCTACAATGCTGCCATCAGGAATTTCTGCATTGCAAAGAGGCTTGGTGATGCTAATGGTTTGGTGGAGGAGATGGTGAGCAAGGGTTTGAGTCCGAATGCAACTACTTACAATTTGTTCTTTAGGGTATTTTACTGGTCCAATGATTTGCATAACTCTTGGATCATGTACAATAGGATGATGGTTGAGGGGTGTCTTCCGAATACGCAGTCTTGTATGTTCTTGATAAGGTTGTTTAGAAAGTATGAGAAGGTGGATATGGCGCTGCAATTATGGGGGAACATGGTGGAAAAGGGTTTTGGGTCGTATACCTTGGTTTCTGACGTGCTGTTTGACTTGCTTTGTGATATGGGGAAGTTGGAAGAAGCAGAGAAGTGCTTTTTGGAGATGATTGAAAAGGGGCAGAAACCGAGTAATGTGTCGTTTAGAAGAATTAAGGTTCTTATGGAACTAGCAAAGAGACATGAGGCCCTTGAGAGCTTGACGCAGAAAATGTCCATATTTGGGCGACCACTCCAATTGCATCAAAGTTCGATGAGCAAAACTGACACAGCGGATTCTCTCTTTACTAATAGTTAG 1503 0.4518 MLVRRFSVKSRLNCALPSIVFPHCFSSTNENDDVQKVFGILSSTSTPEQLKQSLKSSGVFLSNELIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHTAFSLDTMLYILGRSRMFGHVWDLLIECRRKDQTAITARTVMVVLGRIAKVCSVRQTVDSFRKFRKLVTEFDTNCFNALLRTLCQEKSMTDARXVYHSXKHRFRPNLQTFNILLSGWKTPEDAEGFLKEMKEMGVAPDVVTYNSLVDVYCKGREIEKAYKVLEEMRERDLSPDVITYTCIIGGLGLIGQPDKARDVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDANGLVEEMVSKGLSPNATTYNLFFRVFYWSNDLHNSWIMYNRMMVEGCLPNTQSCMFLIRLFRKYEKVDMALQLWGNMVEKGFGSYTLVSDVLFDLLCDMGKLEEAEKCFLEMIEKGQKPSNVSFRRIKVLMELAKRHEALESLTQKMSIFGRPLQLHQSSMSKTDTADSLFTNS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0648 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vra2g0648 500 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 25 484 - -
Vra2g0648 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Vra2g0648 500 PANTHER OS03G0208600 PROTEIN 25 484 - -
Vra2g0648 500 Gene3D Tetratricopeptide repeat domain 31 217 IPR011990 GO:0005515
Vra2g0648 500 Pfam PPR repeat 418 442 IPR002885 -
Vra2g0648 500 Pfam PPR repeat 383 408 IPR002885 -
Vra2g0648 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Vra2g0648 500 Pfam PPR repeat family 235 282 IPR002885 -
Vra2g0648 500 Pfam PPR repeat family 305 350 IPR002885 -
Vra2g0648 500 Gene3D Tetratricopeptide repeat domain 356 492 IPR011990 GO:0005515
Vra2g0648 500 TIGRFAM PPR: pentatricopeptide repeat domain 418 446 IPR002885 -
Vra2g0648 500 TIGRFAM PPR: pentatricopeptide repeat domain 238 272 IPR002885 -
Vra2g0648 500 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Vra2g0648 500 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Vra2g0648 500 SUPERFAMILY TPR-like 174 475 IPR011990 GO:0005515
Vra2g0648 500 Gene3D Tetratricopeptide repeat domain 301 355 IPR011990 GO:0005515
Vra2g0648 500 Gene3D Tetratricopeptide repeat domain 218 300 IPR011990 GO:0005515
Vra2g0648 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Vra2g0648 500 Pfam Pentatricopeptide repeat domain 168 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0648 Vra-Chr2 5230432 5232265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0648 95 473 Miscellaneous Gene Families AT4G11690 25.445 8.89e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0648 - - vun:114183049 941.799