Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0639 ATGATCTGTGGGAGAAGAAAAACGATTAATCCAAATCCATTACTTCATTATGCTAAGAATGGATCCCAATTCCACACCCATAAATCTCGACCCAATGAAAGACCAACTCGTCCAAAATTACGCAGGCGCATTCCCTTCGTCGCCGAAGTCAAAACAGTGGAAGACCCAGAAGAAGCCTTGTCTCTCTTTCACCGTTACAAGGAACACGGTTTCCGCCACTATTACCCTTCCTATGCTGCATTGCTCTATAAATTAGCTCGTTCTAGAATGTTCGAAGCCGTGGAAACCATTCTCGCTCACATGAAAGACACCGATTTGCAATGCAGAGAAAGCGTCTTCATTGCTCTCTTTCAATATTACGGTCCCCAAAAGGCCGTTGAACTCTTCAACAGAATGCCGCAGTTTAACTGTGTCCGCACCATTCAGTCCTTCAACGCTCTTCTCAATGTTCTAGTAGACAATGATAGGTTCGATGAGGCCAATGATGTTTTTGGTCGATCCTATGAAATGGGTTTTCGTCCAAACACCGTCACTTTCAATATAATGACTAAAGGGTGGTTGAGAAAGGGCGAGTGGGGTAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGCGTCGTCACTTACAATAGTCTCATTGGGTTTTTGTGTAGAAAAGGTGATTTGGATAAAGCAATGGCCTTGCTTGAGGACATGGGTCAGAAAGGTAGACGCGCAAATGAAGTAACTTATGCTCTGTTGATGGAGGGTTTGTGTTCCTTGGAGAAGTATGATGAAGCTAAGAAGCTAATGTTTGATATGGCGTATCGTGGGTGTAAACCCCAGCCAGTGAATTTTGGTGTACTGATGAATGATCTTGGGAAGAGAGGAAAGGTTGAGGAGGTCAAGTCTTTGCTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACTTTCAACATATTGATAAATTATCTTTGCAAGGAAGGCAAAGCAGTGGAAGCTTACAAAGTTTTATTTGAGATGCAGATTGGTGGTTGTGAGCCAAATGCAGCTACATACAGGATGGTGGTTGATGGTTTGTGCCGGATAGGGGATTTTGGGATAGGTCTGAGTGTTTTGAATGCAATGCTAACAAGTAGACATTGTCCACGATCGGAAACATTTAATTGTCTGGTTGTTGGCCTTTTGAAATCTGGGAATATTGATGGTGCATGCTTTGTCCTGGAACAGATGGAGAAGAGAAAGATAGAATTTGATTTGGTGAGCTGGGAAACCATAATAAAGTTTTCCTGCAGTGAGGACAAGGGTGTCACTGAGCTTATGACTCTACTTACATCTTCGTAA 1347 0.4298 MICGRRKTINPNPLLHYAKNGSQFHTHKSRPNERPTRPKLRRRIPFVAEVKTVEDPEEALSLFHRYKEHGFRHYYPSYAALLYKLARSRMFEAVETILAHMKDTDLQCRESVFIALFQYYGPQKAVELFNRMPQFNCVRTIQSFNALLNVLVDNDRFDEANDVFGRSYEMGFRPNTVTFNIMTKGWLRKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGRRANEVTYALLMEGLCSLEKYDEAKKLMFDMAYRGCKPQPVNFGVLMNDLGKRGKVEEVKSLLHEMKKRRLKPDVVTFNILINYLCKEGKAVEAYKVLFEMQIGGCEPNAATYRMVVDGLCRIGDFGIGLSVLNAMLTSRHCPRSETFNCLVVGLLKSGNIDGACFVLEQMEKRKIEFDLVSWETIIKFSCSEDKGVTELMTLLTSS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0639 448 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 25 445 - -
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vra2g0639 448 Gene3D Tetratricopeptide repeat domain 124 244 IPR011990 GO:0005515
Vra2g0639 448 Gene3D Tetratricopeptide repeat domain 51 123 IPR011990 GO:0005515
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vra2g0639 448 MobiDBLite consensus disorder prediction 18 38 - -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 212 241 IPR002885 -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 353 384 IPR002885 -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 285 316 IPR002885 -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 388 420 IPR002885 -
Vra2g0639 448 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vra2g0639 448 PANTHER OS05G0548600 PROTEIN 25 445 - -
Vra2g0639 448 Pfam PPR repeat 170 202 IPR002885 -
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vra2g0639 448 Pfam PPR repeat family 314 363 IPR002885 -
Vra2g0639 448 Pfam PPR repeat family 209 258 IPR002885 -
Vra2g0639 448 SUPERFAMILY TPR-like 56 236 IPR011990 GO:0005515
Vra2g0639 448 Pfam PPR repeat 388 417 IPR002885 -
Vra2g0639 448 Pfam PPR repeat 284 311 IPR002885 -
Vra2g0639 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vra2g0639 448 Gene3D Tetratricopeptide repeat domain 247 309 IPR011990 GO:0005515
Vra2g0639 448 Gene3D Tetratricopeptide repeat domain 310 379 IPR011990 GO:0005515
Vra2g0639 448 Gene3D Tetratricopeptide repeat domain 380 446 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0639 144 434 Glycosyltransferase AT1G05670 28.425 6.79e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0639 - - gmx:100776556 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0639 2 5110664 5112185 Vra2g0639 2 5110664 5112185 ECH