Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0624 ATGGCACCAAAGGCAGAGAAGAAGCCAGCAGAGAAGAAGCCTGCAGAGGAGAAGAAGTCCACAGTAGGAGACAAGGCTCCGGCGGAGAAGAAGCCTAAGGCAGGAAAGAAGCTTCCGAAGGAGGGAGGAGCTGGCGGTGACAAGAAGAAGAAGAGAAGCAAGAAGAGTGTGGAGACATACAAGATCTACATCTTCAAGGTCTTGAAGCAGGTTCATCCTGACATTGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTTGCCCAGGAATCTTCTAGACTTGCCCGTTACAACAAGAAACCCACCATCACTTCAAGGGAAATCCAAACTGCGGTCAGACTTGTATTGCCTGGAGAATTGGCCAAACATGCCGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGTTCTTCCAATCAGAAGACAAAACTTTCCCCTATATATACATTCCTCTTAAACTCAGAAAATATTCACAACATCATCTGCTCTCACCCCAAGCTTCTGAAATCCCAATTCGAAACCCTAATTTATTTCAGAGCTCAAAGTTCTGTCCTAGATATGGCACCAAAGGCAGATAAGAAGCCAGCGGAGAAGAAGCCGGCGGAGGAGAAGAAGTCCACCGTAGGAGAGAAGGCTCCGGCTGAGAAAAAACCGAAGGCAGGGAAGAAGCTTCCGAAGGAAGGAGGAGCTGGTGACAAGAAGAAGAGACACAAGAAGAGTGTGGAGACATACAAGATCTACATCTTCAAGGTTTTGAAGCAGGTTCACCCTGACATTGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAATGACATTTTCGAGAAGCTTGCCCAAGAATCTTCTAGACTTGCCCGCTACAACAAGAAACCCACCATCACTTCAAGGGAAATCCAGACTGCGGTCAGGCTTGTGCTACCCGGAGAATTGGCCAAACATGCTGTCTCTGAGGGTACCAAGGCTGTTACAAAGTTCACCAGTTCTTAA 1026 0.4756 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSSSNQKTKLSPIYTFLLNSENIHNIICSHPKLLKSQFETLIYFRAQSSVLDMAPKADKKPAEKKPAEEKKSTVGEKAPAEKKPKAGKKLPKEGGAGDKKKRHKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0624 341 SMART h2b3 50 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 SMART h2b3 244 340 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 MobiDBLite consensus disorder prediction 1 52 - -
Vra2g0624 341 SUPERFAMILY Histone-fold 39 147 IPR009072 GO:0046982
Vra2g0624 341 MobiDBLite consensus disorder prediction 200 247 - -
Vra2g0624 341 ProSitePatterns Histone H2B signature. 309 331 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 Gene3D Histone, subunit A 22 148 IPR009072 GO:0046982
Vra2g0624 341 Gene3D Histone, subunit A 219 341 IPR009072 GO:0046982
Vra2g0624 341 PANTHER HISTONE H2B.1-RELATED 5 147 - -
Vra2g0624 341 PANTHER HISTONE H2B.1-RELATED 201 341 - -
Vra2g0624 341 ProSitePatterns Histone H2B signature. 115 137 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 PRINTS Histone H2B signature 60 78 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 PRINTS Histone H2B signature 79 99 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 PRINTS Histone H2B signature 101 118 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 PRINTS Histone H2B signature 118 131 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 PRINTS Histone H2B signature 131 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 SUPERFAMILY Histone-fold 225 341 IPR009072 GO:0046982
Vra2g0624 341 Pfam Core histone H2A/H2B/H3/H4 4 123 IPR007125 GO:0003677
Vra2g0624 341 Pfam Core histone H2A/H2B/H3/H4 199 317 IPR007125 GO:0003677
Vra2g0624 341 PANTHER HISTONE H2B 5 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 PANTHER HISTONE H2B 201 341 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vra2g0624 341 MobiDBLite consensus disorder prediction 198 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0624 Vra-Chr2 4920063 4925224 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0624 K11252 - gmx:100820177 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0624 2 4920063 4925224 Vra2g0624 2 4920063 4925224 ECH